Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere02g1398 ATGGAGACTGATAATGGTGATACCAAGTCGAAAATGGAAGACTATGAAGTGATTGAGCAAATTGGCAGAGGAGCATTTGGCTCCGCTTATCTCGTTCTCCAGAGGTCTGAGAATAAGAAGTATGTGCTGAAGAAGATTCGCTTGGCCAAGCAAACCGAGAAGTTCAAACGTACAGCGCATCAAGAGATGAACCTGATTGCAAAACTAAATAACCCATATATTGTGGAGTACAAAGATGCTTGGGTGGAGAAGGGGGACTATATATGCATTATAACTGGCTACTGTGAAGGAGGTGACATGGCTGAGAACATAAAGAAAGCTCGGGGATCATTTTTTCCTGAGGAGAAGGTCTGCAAATGGTTGACTCAGTTGCTGATAGCTGTGGACTACCTACACTCTAATCGTGTACTCCACAGAGATCTTAAGTGTTCCAACATATTCCTTACCAAAGACAACGACATTCGTCTTGGTGACTTTGGTCTAGCAAAGCTGCTTAATACAGAAGACCTTGCTTCCTCGGTTGTTGGAACTCCAAACTATATGTGTCCTGAGCTACTCGCAGATATACCTTATGGTTATAAATCTGACATATGGTCACTTGGTTGCTGCATGTTTGAAATTGCTGCACATCAACCAGCATTCCGTGCTCCTGATATGGCTGGACTCATCAATAAAATAAATAGATCCTCGATTTCTCCACTGCCTATTGTTTATTCTTCCACCTTGAAACAACTTATAAAGAGCATGCTGAGGAAAAACCCAGAACATAGACCAACAGCAGCTGAATTGTTAAGGCATCCTCTTTTACAACCTTTTGTTCTCCACTCTCGTAATGCATCATCTAATTTCCTTCCAGTATATCCCATAGTTAACTCAAAGGATAAAACAAAACGATCTTGCAAATCTGGTGGCAAAAAAGGCCATAAGGACAAAGTGGGATCAGAAAATCTTTTGGTTAGGGTTCATCCATTTGAGGGAAATGGAGAGCTACAGCCAAGCAATCTGCCTAACAATGGCAAGCTATCAGTTTCAAGCAGCACAGAAGACATCCTTCAGACCAAGATGGTTGATCCTACTAGCTTCACAGTAGAATCATCTACTAGTATCAGTGGCTCGAAGGATGGATCAACAACATCTGAATCAACTATTTGCAGTGTGAGCAAGGAAGCAGACTTTAAAAATATACCTGCAAGGGAGACAGCTGACAATGAGATTACGTCAAGGAGTATGCCAGATCCTGAGCATGAAGAACAAAGATTTGCTGCTCAACAACTTCAAAAATTGGAAGGGGGTGACATAATTGAAGTGACCACGCTAGTTGAAAATGCTTCTCTGAATGGAGATTATGATAAAACTGAAGAGCAGAGAGATGTCAAACTTGAGGACTCCAGGAAATCAACAACATCAAGCGAAGGCAGCACCGATAAAGGTGGGTCTCTGGATGAGGGAAGTTCATCACCAGTGATGCAGCCTAGTAGTAAGGTTGAAGATGACTCTAAATCTGGAAGCTGCTTACAGAAAGGGGAAAACTTAGATACATTTACTGGAGGCTTGCACATGGATCGCTTGTCTTCTGAGAGTAATGATACACTTGCAGGAAAGGATGAAGGCAGAGAAAAAACACACAACCTCAGTTGCTCCACGAATAAAGAAAATGATAGGACTTGTGTGATTGATCAGACACCAAGTCACATTTCATTGAATGCACTTACTGCAATAGGTGGCGATGAAACCAAGAGCGAGTTGGATAGTCCCTGCCAGCAAAGAGCTGATGCTCTGGAGTCTCTGCTTGAGTTATGTGCTGAGCTACTTAAGCAAGAAAAACTTGAAGAGCTCGCTGGTGTGCTACGACCGTTTGGGCAGGAAGATGTCTCTTCCAGAGAGACGGCGATATGGTTGACCAAGAGCCTGATGTCCGCACATAAATTTAACACTGAAACCTAG 1944 0.427 METDNGDTKSKMEDYEVIEQIGRGAFGSAYLVLQRSENKKYVLKKIRLAKQTEKFKRTAHQEMNLIAKLNNPYIVEYKDAWVEKGDYICIITGYCEGGDMAENIKKARGSFFPEEKVCKWLTQLLIAVDYLHSNRVLHRDLKCSNIFLTKDNDIRLGDFGLAKLLNTEDLASSVVGTPNYMCPELLADIPYGYKSDIWSLGCCMFEIAAHQPAFRAPDMAGLINKINRSSISPLPIVYSSTLKQLIKSMLRKNPEHRPTAAELLRHPLLQPFVLHSRNASSNFLPVYPIVNSKDKTKRSCKSGGKKGHKDKVGSENLLVRVHPFEGNGELQPSNLPNNGKLSVSSSTEDILQTKMVDPTSFTVESSTSISGSKDGSTTSESTICSVSKEADFKNIPARETADNEITSRSMPDPEHEEQRFAAQQLQKLEGGDIIEVTTLVENASLNGDYDKTEEQRDVKLEDSRKSTTSSEGSTDKGGSLDEGSSSPVMQPSSKVEDDSKSGSCLQKGENLDTFTGGLHMDRLSSESNDTLAGKDEGREKTHNLSCSTNKENDRTCVIDQTPSHISLNALTAIGGDETKSELDSPCQQRADALESLLELCAELLKQEKLEELAGVLRPFGQEDVSSRETAIWLTKSLMSAHKFNTET 647
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere02g1398 647 MobiDBLite consensus disorder prediction 447 548 - -
Dere02g1398 647 Gene3D Transferase(Phosphotransferase) domain 1 95 282 - -
Dere02g1398 647 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK 12 597 - -
Dere02g1398 647 ProSiteProfiles Protein kinase domain profile. 15 269 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere02g1398 647 MobiDBLite consensus disorder prediction 325 382 - -
Dere02g1398 647 SUPERFAMILY Protein kinase-like (PK-like) 12 296 IPR011009 -
Dere02g1398 647 FunFam Serine/threonine-protein kinase Nek6 1 94 - -
Dere02g1398 647 CDD STKc_Nek 14 269 - -
Dere02g1398 647 ProSitePatterns Protein kinases ATP-binding region signature. 21 44 IPR017441 GO:0005524
Dere02g1398 647 MobiDBLite consensus disorder prediction 528 547 - -
Dere02g1398 647 Pfam Protein kinase domain 15 268 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere02g1398 647 Gene3D Phosphorylase Kinase; domain 1 2 94 - -
Dere02g1398 647 SMART serkin_6 15 269 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere02g1398 647 MobiDBLite consensus disorder prediction 394 420 - -
Dere02g1398 647 MobiDBLite consensus disorder prediction 447 469 - -
Dere02g1398 647 MobiDBLite consensus disorder prediction 470 510 - -
Dere02g1398 647 MobiDBLite consensus disorder prediction 330 382 - -
Dere02g1398 647 FunFam serine/threonine-protein kinase Nek6 isoform X2 95 283 - -
Dere02g1398 647 ProSitePatterns Serine/Threonine protein kinases active-site signature. 136 148 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere02g1398 Dere-ChrDere02 13490807 13495557 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere02g1398 9 270 MAP Kinase Kinase Kinase AT3G13530 33.208 4.83e-37 147
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK NEK Dere02g1398 Pkinase 1.4e-67 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere01g2469 01 39292506 39297448 Dere02g1398 02 13490807 13495557 CCT
Dere02g1398 02 13490807 13495557 Dere02g1398 02 13490807 13495557 ECH