Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere02g1395 ATGGCTACATTCTGTACATACCTATTCCTTCTTCTCTCTGTAACCTTCACAGTTTTCAATCTCGGTTCATCTTCTTCGTCAGAGGCGGATATCCTTCTCTCCTTCAAGGCCTCCATCGAAGACTCCAGGAAGGCCCTGTCAAGCTGGTCCAATAGTACATCCACCCACTACTGCAACTGGACTGGAATTGCCTGCTCCACCGCTTCTACTTCACTCTCAGTCACTTCCATTGATCTTCAGAACTTTAACCTTTCTGGGGATCTCTCATCTTCAATATGTGACCTTCCAAAACTGTCATACCTTAATCTTGCTGACAACCAATTCAACCAGCCCATCCCTCTTCATCTTTCTCAGTGCAGTTCGCTGGAGACTTTGAATCTCAGTAATAATCTCATATGGGGAACCATCCCACTGCAGATTTCTCAGTTTGGTTCATTGAGAGTGCTTGATTTCAGCAGAAATCATATTGAAGGAAATATACCAGAAAGCTTGGGCTCACTCAAGAACCTCGAAGTCCTTAACATGGGAAGTAACTTGCTATCTGGTGATGTACCCGATATCTTCAGGAATTTCACTAAGCTTACTGTTCTTGACTTGTCTCAAAATCCTTACTTGGAAAGTGAGATTCCAGAGGATATTGGCGAATTAGGAAGTCTCAGGCAACTTCTGTTGCAAAGTTCCGGTTTTCATGGTGAAATTCCAGATTCTTTTGGGGGCCTGAGTAGTTTGACTCATTTAGACCTCTCTCAGAACAATCTTACCGGTGAGATTCCTCAGGCTCTGGTGTCTTCTCTCAAGAACCTGGCGTCTTTTGATGTTTCACAGAACAAGCTTTTGGGGTCATTTCCAGATGGCATTTGTAAAGCAAAAGGCCTAATAAATCTCAGTCTCTACACAAATATCTTCACCGGTTCAATACCCAACTCCACTAGCGAATGCAGGAATCTTGAGAGATTTCAGGTTCAGAACAACGGGTTTTCTGGAGATTTCCCTTATTCATTATGGTCTTTACCTAAGGTTAAGCTCATTAGAGCTGAAAACAACAGATTCTCTGGACAAATACCTGAATCCATATCAGGTGCTGTTCAGTTGGAGCAAGTTCAGCTTGACAATAACAGCTTTGATGGCAATATTCCTCAGAGTCTTGGGTTGGTTAAGAGCTTATACAGATTCTCTGCGTCTCTGAATCGTTTCTACGGAGAACTTCCTCTCAACTTCTGTGATTCCCCTGTTATGAGTATTGTGAATCTTTCTCACAATTCCCTTTCTGGTCAAATCCCAGAGCTGAAAAAATGCAGGAAACTGGTTTCATTGTCTTTAGCTGACAATAGTCTTACTGGACAAATACCTCCTTCCCTTGCTGAGTTACCAGTGCTGACTTATCTTGATCTTTCAGCTAACAATCTCACTGGTTCAATCCCACAAGGACTTCAAAATCTAAAGCTTGCTCTTTTCAATGTGTCCTTCAATCAGCTATCTGGTAAGGTACCATACTCCTTGGTTTCTGGTCTCCCTGCCTCATTTTTGGAAGGAAACCCTGGACTTTGTGGTCCTGGATTACCCACTTCCTGTTCTGATGACCCACCAAGACACCATACTGGGGGTCTCACTGCCCTGGCATGTGTCCTTATCTCTGTAGCCTTCGTTGTTGGTACTGCGATTCTTGCTGGTGGATTTATATTATATAGGAAGTCTTGCAAGAGGAATCAAATAGGAGTTTGGCGCTCAGTCTTCTTCTATCCTCTTAGAATTACTGAGCATGATTTGCTTATAGGAATGGATGAGAAAAGCTTGATTGGATATGGTGGGGGTTTTGGCAAAGTTTATGTTGTGAGTTTACCTAGTGGTGAACAAGTGGCTGTGAAGAAGCTAGTCAATTTTGGGAACCAGACTTCAAAAAGTTTGAAAGCTGAGATCAAGACATTGGCCAAGATTAGGCATAAGAATGTTGTTAAAATCCTGGGGTTTTGCCATTCTGATGAGTCAATCTTTCTCATTTATGAGTACTTACAAAAAGGAAGCTTAGGGGACTTGATTTCTCGTCAGGATTTTGAGTTGCAGTGGGAGGCAAGATTGAGGATTGCCATCAAGGTAGCTCAAGGACTAGCTTATCTTCACAATGACTACGTTCCTCACTTGCTTCACAGAAATGTCAAGTCCAAGAACATTCTGCTGGATGCAGACTTGGAGCCAAAACTCACAGATTTTGCTCTTGATCGAATTGTGGGAGAAGCTGCATTTCAGTCAACTTTTGCTTCTGGAGCAGCATCTTCCTGTTATAATGCTCCAGAATACGGGTACAGTAAGAAAGCAACTGAAGAATTCGACATATACAGCTATGGTGTTGTATTGCTAGAGCTAGTGACCGGGAAGCAAGCAGATCAACCAGTATCAACCGAATCTCTTGACATAGTTAAGTGGGTTAGAAGAAGAGTGAACATCACTGATGGGGTGCATCAACTTCTTGACCCCAAAATATCACATTCTAATCAGCAAGAGATGATTGGAGCTCTGGAAATCGCTCTTCGTTGCACTTCCGTGGTGCCCGAAAAAAGACCATCTATGGTAGAAGTTGTAAGAGCTCTTCAGTCTCTTGAGTCACGAACCAGCGTTGCAAATTCTCAGGATTCATATGAGGAACACTCGGCTCCAATATGA 2658 0.4278 MATFCTYLFLLLSVTFTVFNLGSSSSSEADILLSFKASIEDSRKALSSWSNSTSTHYCNWTGIACSTASTSLSVTSIDLQNFNLSGDLSSSICDLPKLSYLNLADNQFNQPIPLHLSQCSSLETLNLSNNLIWGTIPLQISQFGSLRVLDFSRNHIEGNIPESLGSLKNLEVLNMGSNLLSGDVPDIFRNFTKLTVLDLSQNPYLESEIPEDIGELGSLRQLLLQSSGFHGEIPDSFGGLSSLTHLDLSQNNLTGEIPQALVSSLKNLASFDVSQNKLLGSFPDGICKAKGLINLSLYTNIFTGSIPNSTSECRNLERFQVQNNGFSGDFPYSLWSLPKVKLIRAENNRFSGQIPESISGAVQLEQVQLDNNSFDGNIPQSLGLVKSLYRFSASLNRFYGELPLNFCDSPVMSIVNLSHNSLSGQIPELKKCRKLVSLSLADNSLTGQIPPSLAELPVLTYLDLSANNLTGSIPQGLQNLKLALFNVSFNQLSGKVPYSLVSGLPASFLEGNPGLCGPGLPTSCSDDPPRHHTGGLTALACVLISVAFVVGTAILAGGFILYRKSCKRNQIGVWRSVFFYPLRITEHDLLIGMDEKSLIGYGGGFGKVYVVSLPSGEQVAVKKLVNFGNQTSKSLKAEIKTLAKIRHKNVVKILGFCHSDESIFLIYEYLQKGSLGDLISRQDFELQWEARLRIAIKVAQGLAYLHNDYVPHLLHRNVKSKNILLDADLEPKLTDFALDRIVGEAAFQSTFASGAASSCYNAPEYGYSKKATEEFDIYSYGVVLLELVTGKQADQPVSTESLDIVKWVRRRVNITDGVHQLLDPKISHSNQQEMIGALEIALRCTSVVPEKRPSMVEVVRALQSLESRTSVANSQDSYEEHSAPI 885
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere02g1395 885 Gene3D Ribonuclease Inhibitor 290 524 IPR032675 -
Dere02g1395 885 Pfam Leucine rich repeat 218 278 IPR001611 GO:0005515
Dere02g1395 885 Pfam Leucine rich repeat 121 180 IPR001611 GO:0005515
Dere02g1395 885 FunFam Leucine-rich repeat family protein 27 185 - -
Dere02g1395 885 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 8 864 - -
Dere02g1395 885 PRINTS Leucine-rich repeat signature 243 256 - -
Dere02g1395 885 PRINTS Leucine-rich repeat signature 456 469 - -
Dere02g1395 885 ProSiteProfiles Protein kinase domain profile. 594 865 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere02g1395 885 Gene3D Ribonuclease Inhibitor 25 184 IPR032675 -
Dere02g1395 885 FunFam - 588 669 - -
Dere02g1395 885 Gene3D Phosphorylase Kinase; domain 1 588 669 - -
Dere02g1395 885 FunFam Leucine-rich repeat receptor-like tyrosine-protein kinase PXC3 670 870 - -
Dere02g1395 885 SMART LRR_typ_2 265 289 IPR003591 -
Dere02g1395 885 SMART LRR_typ_2 95 119 IPR003591 -
Dere02g1395 885 SMART LRR_typ_2 191 216 IPR003591 -
Dere02g1395 885 SMART LRR_typ_2 167 190 IPR003591 -
Dere02g1395 885 SMART LRR_typ_2 120 143 IPR003591 -
Dere02g1395 885 SMART LRR_typ_2 240 264 IPR003591 -
Dere02g1395 885 SMART LRR_typ_2 456 479 IPR003591 -
Dere02g1395 885 Pfam Protein kinase domain 596 860 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere02g1395 885 FunFam Probably inactive leucine-rich repeat receptor-like protein kinase At5g06940 264 527 - -
Dere02g1395 885 Pfam Leucine rich repeat N-terminal domain 26 66 IPR013210 -
Dere02g1395 885 CDD STKc_IRAK 603 865 - -
Dere02g1395 885 SUPERFAMILY Protein kinase-like (PK-like) 602 862 IPR011009 -
Dere02g1395 885 Gene3D Transferase(Phosphotransferase) domain 1 670 883 - -
Dere02g1395 885 SUPERFAMILY L domain-like 207 521 - -
Dere02g1395 885 SUPERFAMILY L domain-like 25 289 - -
Dere02g1395 885 Gene3D Ribonuclease Inhibitor 185 289 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere02g1395 Dere-ChrDere02 13459257 13462032 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere02g1395 32 865 Receptor kinase-like Gene Family AT5G06940 63.647 0.0 1045
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Dere02g1395 Pkinase 5.3e-40 CL0016