Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere02g1391 ATGGGAGATTGTTGCTTTAATTGCAATCTTCGCTCTGTGAAGAAAGTCCACGCCTTTCTTATCGTGTCAAATGCATTGGTATCTAATTCTATTGCTTCGAAGCTCATCAGCTTGTATGCTCGGTTCGATGACTTGGGCAGTGTCCTTGGGGTATTTAGAACTCTACAAGAAGTGCCTAATACCATGATGTGGAATTTGATAATAAAGTCCCACGTTGATTTGGGACTCTTCCACGAGGCCTTTTTATTGTACAAACAGATGAGAGAAGTAGGCGTTCTTCATGACAGTTTTACTTTACCTCCTATAAACCAAGCTTTATCTTCCATCCGAAGCGATGCTGTGTTTGCAAAAATGATCCACTGTCACGCAATTCAAATGGGTTTGGATCTGGATTTATATTTTTGCAACACCATGATTGATGTTTACGCGAAATGTGGGTGCGTCAGTTGTGCACGTAATTTGTTTGATGTTATGCCGCAGAGAGATTTGGTTTCCTGGACATCTATGATTGCTGGATATATTTCTGAGAGACGAGTTAGTGTCGCCTCTAATCTGTTCAACAAAATGAGGATGGAATTGGAGCCGAATTCGGTGACTCTGCTAGTCATGTTGCGAGCGTGTTGTGCCTCTAAAACTTTGATGGATGGAAATCAAGTTCACGGGTATGCCGTAAAGAGCGGATTGCTAATGGATACTTCAGTACAAAATGCCGTTTTGAGCATGTATGCTAACATCGGGAATACTGAAGACGTGGAAACTGTTTTCAGTGAAATTGACAGAAAAGACGTTGTTTCCTGGAATATCTTGATTTCCTTCCACGGAATGAGAGGAGATATCATGGAAGTAGCTCGTATGTCCAGCGAAATGCGAAGTGGAGAAGAGTTTTTATTGAATATTAAGACTTCAACCCTTGTCATATCAGCAATGGCAAAGTTTGGTTGTCTTTCTCAGGGTGAAAGCGTACATTGTTTAGTCATAAAAACTGGGTTATCTGATGATATTTTGCAGACTTCTTTGCTCAATTTTTATGCAAAATGTGGGAAAGTGGAAATAGCTGTTAAATTGTTCAGAGAAATTTATCATAAAAGTAACATAGCTTGGAGTGCTATGATGTCAGGTTTTATTCAAAATGGTCAGTTTATGGAGACCATAACTTTATTTCGACAAATGCATGCTGCACATCTTGATCCTGTTCCTGAAATTTGGAGAAATCTAATTGATGCATACGCTAATCTAGGTGCTCTGAAATTGGGCAAAGGGGTTCATGGTTATCTTATAAAGAACTTGTTGAATGGAGTTGAGGAAGATATTACACCCCTGGAGAATTCTATCTTAAACATGTATATAAGAAGTGGTAGCATATCTTTAGCTAGAGCATATTTTGACAGGTTATTAATCAAAGATGTCGTAGCATGGACAACTATGATTGAGGGATTCGGGTCCCATGGTTTTGGCTTTGAAGCCCTCAAGTATTTCGAATTAATGATAGATCAAAGAGTACAGCCAAACTCTGTCACCTTCTTAAGTTTGTTGTCTGCTTGCAGCCACTCTGGTCTTGTGAGTGAAGGCTGCAAAATTTACTGTTCCATGAAATGGGATTTTGGTATTGAAGCAGCTTTGGATCACCACACTTGCATTGTGGATCTTTTGGGTCGATACGGGTTGCTTGAAGAGGCCTTAGCCATAATACTGAAAATGATTGTTCTACCTGATAGCAGGATTTGGGGTGCTCTTCTGGCGGCTTCCAGAGTTTATGGAAATAAAAAAGTTGGAGAATATGCAGCTGAAAGACTTTTGGAATTAGAACCTGATAATGCTGGTTATTATACTCTGTTGAGTAATGTAAAAGCAAGTGTTGGAAGATGGGATGAAGTTGAAGAATTGAAGAGAGTTATGAGTGAGAAAAATCTCAAGAAGAAACCAGGGTGGAGCTGCATTGAGGTTAAAGGGGTCATGCAAGGATTCACTTCTGGGGATGTCTCACATCCTAAAGCAGAGGAGATTTATAAGGCATTGGGTAGTTTGACAATTGCAACACCTTCTGTCTAA 2049 0.3978 MGDCCFNCNLRSVKKVHAFLIVSNALVSNSIASKLISLYARFDDLGSVLGVFRTLQEVPNTMMWNLIIKSHVDLGLFHEAFLLYKQMREVGVLHDSFTLPPINQALSSIRSDAVFAKMIHCHAIQMGLDLDLYFCNTMIDVYAKCGCVSCARNLFDVMPQRDLVSWTSMIAGYISERRVSVASNLFNKMRMELEPNSVTLLVMLRACCASKTLMDGNQVHGYAVKSGLLMDTSVQNAVLSMYANIGNTEDVETVFSEIDRKDVVSWNILISFHGMRGDIMEVARMSSEMRSGEEFLLNIKTSTLVISAMAKFGCLSQGESVHCLVIKTGLSDDILQTSLLNFYAKCGKVEIAVKLFREIYHKSNIAWSAMMSGFIQNGQFMETITLFRQMHAAHLDPVPEIWRNLIDAYANLGALKLGKGVHGYLIKNLLNGVEEDITPLENSILNMYIRSGSISLARAYFDRLLIKDVVAWTTMIEGFGSHGFGFEALKYFELMIDQRVQPNSVTFLSLLSACSHSGLVSEGCKIYCSMKWDFGIEAALDHHTCIVDLLGRYGLLEEALAIILKMIVLPDSRIWGALLAASRVYGNKKVGEYAAERLLELEPDNAGYYTLLSNVKASVGRWDEVEELKRVMSEKNLKKKPGWSCIEVKGVMQGFTSGDVSHPKAEEIYKALGSLTIATPSV 682
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere02g1391 682 Gene3D Tetratricopeptide repeat domain 441 662 IPR011990 GO:0005515
Dere02g1391 682 Gene3D Tetratricopeptide repeat domain 1 106 IPR011990 GO:0005515
Dere02g1391 682 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 363 397 IPR002885 -
Dere02g1391 682 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 192 676 IPR046960 GO:0003723|GO:0009451
Dere02g1391 682 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 131 165 IPR002885 -
Dere02g1391 682 FunFam Pentatricopeptide repeat-containing protein, mitochondrial 441 664 - -
Dere02g1391 682 Pfam E motif 585 647 IPR046848 -
Dere02g1391 682 SUPERFAMILY TPR-like 302 628 IPR011990 GO:0005515
Dere02g1391 682 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 468 502 IPR002885 -
Dere02g1391 682 FunFam Pentatricopeptide repeat-containing protein 62 216 - -
Dere02g1391 682 Pfam PPR repeat family 467 515 IPR002885 -
Dere02g1391 682 Pfam PPR repeat family 162 208 IPR002885 -
Dere02g1391 682 NCBIfam pentatricopeptide repeat 366 395 IPR002885 -
Dere02g1391 682 NCBIfam pentatricopeptide repeat 164 190 IPR002885 -
Dere02g1391 682 NCBIfam pentatricopeptide repeat 135 163 IPR002885 -
Dere02g1391 682 NCBIfam pentatricopeptide repeat 63 94 IPR002885 -
Dere02g1391 682 NCBIfam pentatricopeptide repeat 470 503 IPR002885 -
Dere02g1391 682 Gene3D Tetratricopeptide repeat domain 333 437 IPR011990 GO:0005515
Dere02g1391 682 Gene3D Tetratricopeptide repeat domain 220 332 IPR011990 GO:0005515
Dere02g1391 682 Gene3D Tetratricopeptide repeat domain 107 219 IPR011990 GO:0005515
Dere02g1391 682 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 60 94 IPR002885 -
Dere02g1391 682 Pfam PPR repeat 236 262 IPR002885 -
Dere02g1391 682 Pfam PPR repeat 63 92 IPR002885 -
Dere02g1391 682 Pfam PPR repeat 544 567 IPR002885 -
Dere02g1391 682 Pfam PPR repeat 366 391 IPR002885 -
Dere02g1391 682 Pfam PPR repeat 337 359 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere02g1391 Dere-ChrDere02 13427395 13430833 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere02g1391 9 675 Glycoside Hydrolase AT3G49170 29.941 7.48e-92 302
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere01g2476 01 39465210 39470461 Dere02g1391 02 13427395 13430833 CCT
Dere02g1391 02 13427395 13430833 Dere02g1391 02 13427395 13430833 ECH