Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere02g1386 ATGGATTTGAATTCGCATCAGAATTATCAGCATCAATCCAATTCAGGATTGCTTCGGTTTCGCTCTGCCCCCAGCTCACTTCTCGCTGATTTCACGCAGGCTGTTGAATCTGCTGAATCAGGGAGACGAATTTCTAGATTCGCAAACAATAGCAATAACAGCGATACGGCATCGCCTAGCTTTCAAGAATTCGAAGACAAACCTCATAAAGCGCCAACGGAGGCTGCTCTGAACCGTATGAATTCCCAGCAAGGCTATAGTGGCAGTGGGCTACCCCCTCACTATCCCAGGCATAGTTCCACTGTAAGTTCCTCCATGGATAGCTCCTATGGACTGATGGGTTCAGTGGGAATGGATCACGAAACCCACCCGAAAAGCTTTGGTTCGCCTCTGGTGAGGCAAAGTAGCTCCCCCGCCGGGCTTTTCTCCAACATCTCCTTTCCCAATGGGTATGGCACCATGAAAGGTGTAAGAAACTATGGTGGGGTGAATGACAGTAGTAATGGCGAACTTACTTCATCTATCAACGGATTGAAGAATCAGATTAGCTTCTCATCAAGAAGCACTTCCCTGGGAGTTTTGTCACAGATCTCTGAAATAGATTGTGAGAGCATTGGAGCAACTAGCCCTGATGATGGTAGGCTGGCAGCCAGCAGTGGTGATACTCGATATTATAGCCCTGGCTTCCCTTATGGTTCCTGGAATGACAGCTCACATGTCTCAGAAAATCTCACTCCCTTTAAAAGAGAGCAAACTAGTAATGAAAAGTTATATTCTGATGCTCAGAATGTTGAGCTAGGAAACCGGGTTAATGTATTATCGCATCACTTGAGTTTGCCGAAAACCCCAGCAGAGACGGCTGCTATGGAGAAGTTTCTTCAATTCCCAGATACTGTTCCTTGTAAAATCAGAGCCAAGCGGGGCTGTGCCACTCATCCTCGAAGCATTGCAGAAAGGGTGAGAAGAACTCGTATCAGCGAACGAATGAAAAAATTACAAGATCTTGTCCCAAACATGGACAAGCAAACAAACACAGCAGACATGTTGGACTTGGCTGTCATGTACATTAAAGATCTCCAGAAACAATTCAAGACTCTGAGTGAGAAACGGGCCAACTGCAAATGTACAATCATGCCGAAAGCAGACACAAATAAAGGATTTGTAACGGGGAGAATGTCGAATTTGTACGGCGATTTTAATAATAAGATTGATTATGTATTCAAAGTGGTCTTGATCGGGGACTCTGCCGTTGGTAAAACTCAATTGCTTGCTCGCTTTGCAAGGAATGAATTCAGCATGGATTCCAAAGCCACTATTGGGGTTGAATTCCAGACTAAAACCCTCGTTATTGATCAAAAGACGGTGAAGGCACAGATTTGGGATACTGCAGGGCAAGAAAGGTACAGGGCTGTTACTAGTGCATACTATCGAGGTGCAGTTGGAGCAATGTTAGTTTATGACATGACTAAACGACAATCATTTGATCACATGGCAAGGTGGCTTGAGGAACTAAGAGGTCATGCTGACAAAAATATTGTTATTATGCTAATTGGCAATAAGTGTGATTTGGGAAGTCTTAGAGCAGTTCCAACTGAAGATGCCCAAGAGTTCGCGGAAAGAGAGAGCCTATTCTTTATGGAGACATCAGCCCTTGAGTCCACTAATGTTGAAACTGCCTTTCTGACTATTTTAACTGAGATATACCGAATTATCAGCAAGAAAACGCTTGCGGCCAACAATGAGGCAGATCCTAGTGGTAATTCCCTTCTGAAAGGGAGTGTGATAATTGTTCCTGACCCGAACGAGGCTGTTGCAGGAAAGAAAGGCTGCTGCTTTGCCTCCTAA 1845 0.4466 MDLNSHQNYQHQSNSGLLRFRSAPSSLLADFTQAVESAESGRRISRFANNSNNSDTASPSFQEFEDKPHKAPTEAALNRMNSQQGYSGSGLPPHYPRHSSTVSSSMDSSYGLMGSVGMDHETHPKSFGSPLVRQSSSPAGLFSNISFPNGYGTMKGVRNYGGVNDSSNGELTSSINGLKNQISFSSRSTSLGVLSQISEIDCESIGATSPDDGRLAASSGDTRYYSPGFPYGSWNDSSHVSENLTPFKREQTSNEKLYSDAQNVELGNRVNVLSHHLSLPKTPAETAAMEKFLQFPDTVPCKIRAKRGCATHPRSIAERVRRTRISERMKKLQDLVPNMDKQTNTADMLDLAVMYIKDLQKQFKTLSEKRANCKCTIMPKADTNKGFVTGRMSNLYGDFNNKIDYVFKVVLIGDSAVGKTQLLARFARNEFSMDSKATIGVEFQTKTLVIDQKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLEELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAERESLFFMETSALESTNVETAFLTILTEIYRIISKKTLAANNEADPSGNSLLKGSVIIVPDPNEAVAGKKGCCFAS 614
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere02g1386 614 NCBIfam small GTP-binding protein domain 406 563 IPR005225 GO:0005525
Dere02g1386 614 SMART ras_sub_4 404 570 - -
Dere02g1386 614 Pfam Helix-loop-helix DNA-binding domain 314 360 IPR011598 GO:0046983
Dere02g1386 614 SMART rab_sub_5 407 570 - -
Dere02g1386 614 MobiDBLite consensus disorder prediction 40 133 - -
Dere02g1386 614 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 312 376 IPR036638 GO:0046983
Dere02g1386 614 MobiDBLite consensus disorder prediction 43 61 - -
Dere02g1386 614 FunFam Transcription factor bHLH130 family 310 378 - -
Dere02g1386 614 FunFam ras-related protein RABA5a 399 611 - -
Dere02g1386 614 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 309 359 IPR011598 GO:0046983
Dere02g1386 614 ProSiteProfiles small GTPase Rho family profile. 400 571 - -
Dere02g1386 614 SMART arf_sub_2 392 572 - -
Dere02g1386 614 PANTHER DRAB11-RELATED 402 585 - -
Dere02g1386 614 SMART rho_sub_3 409 566 IPR001806 GO:0003924|GO:0005525
Dere02g1386 614 SMART ran_sub_2 412 604 - -
Dere02g1386 614 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 403 575 IPR027417 -
Dere02g1386 614 Gene3D - 399 596 IPR027417 -
Dere02g1386 614 MobiDBLite consensus disorder prediction 76 111 - -
Dere02g1386 614 Pfam Ras family 408 568 IPR001806 GO:0003924|GO:0005525
Dere02g1386 614 CDD Rab11_like 404 568 - -
Dere02g1386 614 ProSiteProfiles small GTPase Rab1 family profile. 402 611 - -
Dere02g1386 614 ProSiteProfiles small GTPase Ras family profile. 401 597 IPR001806 GO:0003924|GO:0005525
Dere02g1386 614 Coils Coil 356 376 - -
Dere02g1386 614 PRINTS Transforming protein P21 ras signature 407 428 - -
Dere02g1386 614 PRINTS Transforming protein P21 ras signature 545 567 - -
Dere02g1386 614 PRINTS Transforming protein P21 ras signature 430 446 - -
Dere02g1386 614 PRINTS Transforming protein P21 ras signature 510 523 - -
Dere02g1386 614 PRINTS Transforming protein P21 ras signature 448 470 - -
Dere02g1386 614 Gene3D - 310 380 IPR036638 GO:0046983
Dere02g1386 614 SMART finulus 315 365 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere02g1386 Dere-ChrDere02 13381000 13388657 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere02g1386 1 365 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G42280 48.953 4.34e-94 291
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Dere02g1386 Ras 2.4e-60 CL0023