Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere02g1367 ATGGGTTCAAGCTCTGTGACTGAAGCTGCAGCCGCCTCCAACTCCTCCACGGAGTCCCTCAATGGCTTGAAATTCGGGCAGAAGATATACTTCGAGGATGGGGGTGTGGGAGGCCCTGCGAAATCCGGCGGTGGGGCGTCGTCGTCGTCGTCAGGGGCCACCCCGCCTAAGAAGGGAAGGGGTAGTGGGGTTCAGGGGGCTCAGCCTCCAAGGTGTCAGGTGGAGGGCTGCAAAGTAGATCTGAGTGATGCCAAGGCTTACTATTCCAGACATAAAGTCTGTAGCATGCACTCCAAATCACCCACGGTCGTTGTCGCTGGTCAGCAGCAAAGGTTTTGCCAACAGTGTAGCAGATTTCATCAGCTTTCTGAATTTGATCAAGTAAAACGAAGTTGTCGCAGGCGACTTGCTGGCCATAATGAACGCCGGAGAAAACCCCCACCCAGTTCCTTGATGGCTTCTCGATATGGCCGAATAGCTCCAGCTAATTTTGATAGCAGCAGTAGCAGAGGTGGTGGTTTTCTAATGGAATTTGCTACTTATCCAAAACTTAGTCTGAGAAATCCAATGACAACTCCAACATCATCTGAGCAGGTTCCTGGGAATCCAACAGGGACACTCCCATGGCACGGCAATTCGGAGCCACCATCTTTACTTTTCTTGCAAGCGGGTTGTTCTTCGATGGGTGGCACAAGCTACTCTGGTTCCAGAAATTCTTCGTCAGGGGAAAGCTTTTCAGGATTGACAGACTCAAGCTGTGCTCTCTCTCTTCTGTCAAACCAAGCTTGGGCCCCACGAAACAGAGCGCCAAGTCTTGGTACGAATAACTTCATGAGCTTTGACGACACACCCATCACACAACTTGCTGCATCTTCGCATCATGGACATGGAGCATCCCTCCATCATCAACTTTCCAATGCGTCGTGGTGTTTCAAGGGCATTGATGCTGCTGGTGCTGCTGATAATTGTTCTCATGACATTGTCCCTGATCTAGGCCTGGGTCACCAGATTTCGCAGCCTATTAGTAGCCCACTTCCTGGGGAGCTTGACGTGTCACAACAGGGCAGGAGGCATTATATGGATCTAGAGCAGTCGAGGGTGTATGATGATTCGCAGCATCATATGCACTGGTCCCTTTAG 1140 0.5105 MGSSSVTEAAAASNSSTESLNGLKFGQKIYFEDGGVGGPAKSGGGASSSSSGATPPKKGRGSGVQGAQPPRCQVEGCKVDLSDAKAYYSRHKVCSMHSKSPTVVVAGQQQRFCQQCSRFHQLSEFDQVKRSCRRRLAGHNERRRKPPPSSLMASRYGRIAPANFDSSSSRGGGFLMEFATYPKLSLRNPMTTPTSSEQVPGNPTGTLPWHGNSEPPSLLFLQAGCSSMGGTSYSGSRNSSSGESFSGLTDSSCALSLLSNQAWAPRNRAPSLGTNNFMSFDDTPITQLAASSHHGHGASLHHQLSNASWCFKGIDAAGAADNCSHDIVPDLGLGHQISQPISSPLPGELDVSQQGRRHYMDLEQSRVYDDSQHHMHWSL 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere02g1367 379 MobiDBLite consensus disorder prediction 186 211 - -
Dere02g1367 379 MobiDBLite consensus disorder prediction 136 156 - -
Dere02g1367 379 ProSiteProfiles Zinc finger SBP-type profile. 69 146 IPR004333 GO:0003677
Dere02g1367 379 SUPERFAMILY SBT domain 70 151 IPR036893 GO:0003677|GO:0005634
Dere02g1367 379 Pfam SBP domain 72 145 IPR004333 GO:0003677
Dere02g1367 379 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 14 332 IPR044817 GO:0003677
Dere02g1367 379 FunFam Squamosa promoter-binding-like protein 14 63 133 - -
Dere02g1367 379 MobiDBLite consensus disorder prediction 186 213 - -
Dere02g1367 379 MobiDBLite consensus disorder prediction 36 71 - -
Dere02g1367 379 Gene3D - 62 133 IPR036893 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere02g1367 Dere-ChrDere02 13157811 13160995 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere02g1367 23 379 SBP-box Gene Family AT2G42200 43.386 3.83e-65 210
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Dere02g1367 SBP 1.1e-32 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere02g1367 02 13157811 13160995 Dere02g1367 02 13157811 13160995 ECH