Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere02g1359 ATGATTGCGTCCCCATTCATCCGGAGTCTCCCATTCCGAAACGCAATTCATGTCTCACTTGCATTTCAAATCGGAAAAGAGCTAGAGGTGAAAGGAAAAGAGTGCGACGTTATATTTGGAAAGGTTAGAAAGCTGATGGCGTCCAAAGGTCCGAGGTCTAAGATTGATCATGAGAGTAGAGCAAAGCGGCAAAAGGCACTTGAGGCTCCAAGGGAGCCTCGACGTCCTAAGACTCATTGGGATCATGTCATAGAAGAGATGGTGTGGTTATCAAAGGACTTTGAATCAGAGAGGAAATGGAAATTAACTCAGGCAAAGAAAGTTGCTTTAAGAGCCAGCAAGGGCATGTTAGATCCGGCTACAAGAGGTGAAAAGAAGATGAAGGAAGAAGAACAGCGATTAAGAAAAGTTGCTCTAAATATTTCTAAGGATGTTAAGAAATTTTGGATGAAAATAGAAAAGCTGGTTCTTTACAAGCATCAGATGGAGCTTGATGAAAAAAAGAAAAAGGCACTAGACAAACAACTTGAGTTTCTTTTGGGGCAAACTGAGAGGTACTCAACCATGTTGGCAGAAAATCTTGTGGATGCTATTAAACCAGTAGAGAAACAGTTGTCAGAGCATCATAGGAGTGTTCAATACAAGGGTGTAGATGAAGACATTGCCAACAAATGTAATGAAGTTAATGCTGCAGAGTTTCAGTCAGATGCTATCGACAATGATGATGAATATGATATACAATCTGATGATGAATCGGAGGATGATGAGCAAACCCTTGAGGAAGATGAGGCTCTTATAACTGAAGAGGAAAGGCAAGAGGAGTTGGCAGCTTTGCATGATGAAATTGATCTTCCACTCGAGGAATTACTGAAACGTTATTCTGTAGAGAAAGGTAAGCTTATTGTAGAAACCCACCACTTATCTGCAGAATGCCAGGTTGGATCAGTGAGTCGAGAAAGTAGTCCAGAATGCAGTGAAGATGATACTCAGATAGTCAGAGCAGGTGATGGCAATGAAAATGGAAAAAATCTTTTGTCATTTAGCAAGGTTGACATAAGCAACTCCAATGTGATCTCTGGTCGTCGTTGTGATGAAAGTAATGGTGGCCAAACTTTATCAGCAGAGAACCTATCCAAAGATATGACGAGTCAATCTGAAAATCTAAAACAAATTTCTAGTGAGAGGGTCACTGGTAATTTTGCATATGACTTCAGTGATGAAGAGGAAGATGGTGACTTCTTGCTTGCCACAGAAGATAAGGATGACGAAACAACCTTATCTGAGGAGGAAAAACTGGAAAAAGTGGATGCAATTGATCCAAAGGATGAGATTGCTTTATTACAAAAGGAGAGTGAAATGCCTGTTGAGAAACTTCTAGCTATGTATAAAAAGTACTCTAGTGATGAACATGGGGAAGATGAATCTGATGATGCTTCTGCTTTGTCGGAGGACCTTTTGGATTCTTTGCTCCATGAAGATGATCAGAAGAAGGATCCTGCAGTTTTTGTGGATGAAGATGTCAAGCCTGATGAGCACGTGGCTGTTGTACAGTCCCAGGTAGAAGAACAACATTTGGAAGCACCTCATGAAAATCCTGAAGAAAGGGAGAGTGAAATTCTAATTGCAGATGCAGCAGCTGCTGCAAGATCAGCACAACCAACTGGAAACACCTTCTCCACAACTAAAGTGCGCACAAAATTCCCTTTTCTACTGAAGTACCCTCTCCGTGAGTATCAACACATTGGATTGGATTGGCTTGTCACAATGTATGAAAAAAGATTAAATGGAATTTTGGCAGATGAAATGGGGCTTGGTAAAACAATTATGACAATAGCTTTGCTTGCACATCTTGCTTGTGAGAGAGGGATTTGGGGCCCACATCTCATTGTGGTACCGACTAGTGTCATGCTTAACTGGGAGACTGAGTTTCTCAAATGGTGTCCTGCTTTTAAAATTTTGACTTATTTTGGAAGCGCAAAGGAGCGGAAACTTAAAAGACAAGGATGGTTGAAACCAAACTCATTTCATGTATGCATAACAACTTACAGACTAATTATTCAGGATTCTAAAGTTTTTAAGCGCAAGAAATGGAAATATTTGATCTTAGATGAAGCTCATCTCATCAAAAATTGGAAGTCACAAAGATGGCAAACTCTCTTGAATTTCAATTCAAAGCGACGTATTCTCTTGACTGGTACACCACTGCAGAATGATCTAATGGAACTCTGGTCTCTCATGCATTTCTTGATGCCCCATGTTTTCCAGTCTCATCAGGAGTTTAAGGATTGGTTTAGTAATCCTATATCTGGGATGGTAGAGGGAGAGGAAAAAGTTAATAAGGAGGTTGTTGATCGGTTACACAATGTCCTTCGTCCATTCATACTCCGTCGATTAAAGCAAGATGTCGAGAAGCAACTTCCAATGAAACATGAGCATGTCATATACTGTAGACTGTCAAAAAGGCAGCGAAATTTGTATGAAGACTTCATTGCTAGTTCAGAGACCCAAGCCACTCTTGCAAGTGCCAATTTTTTTGGGATGATTAGTATCATAATGCAACTTCGTAAAGTTTGCAATCATCCTGACCTATTTGAAGGTCGTCCTATTGTCAGTTCTTTTGATATGTTGGGTATTGATGTTCAGCTAAGTTCTTCTGTGTGTTCAATGTTCTCACCTAGCCATTTTTCAACAGTAGACCTTAAAGGTTTAGGATTTTTATTTACTCATCTTGATTATAGCATGACTTCATGGGAGAGTGATGAAGTAAAGGCTATTGAGACCCCTGCAAGTTTAATTATGGAGTGTGATGATATGAATGGCCTGCAAGTAATTAGGCCTGAATTGAAGTATCGGAAAAAGCTTCATGGAACTAATATTTTTGAGGAAATTCAGAGGGCAATTTGGGAAGAAAGGCTGAGAGAAGCAAAGGAGCGTGCAGCAGCTATTGCTTGGTGGAATTCTTTAAGGTGTAAAAAACGTCCCACCTATTCAACAACCCTACGTGATCTTCTTACCATTAGGCATCCTGTATATGACATTCATCAGGTGAAGGCTAACCCTATGTCATACATGTACTCCTCAAAGCTAGCTGACATTATCCTCTCACCAGTTGAACGTTTCCAAAGGATGATTGATGTGGTTGAAAGTTTCATGTTTGCAATTCCAGCTGCACGAGTTCCACCACCTGTTTGCTGGTGCAGTAGAAGTGAAACACCGGTGTTTCTGCATCCCTCTTACAAGCAGAAATGCTCTGAAGTTTTGTCACCCCTTTTGTCACCAATCAGGCCTGCAATTGTCCGACGACAGGTGTACTTCCCAGATAGGCGTCTTATACAATTTGACTGTGGGAAACTGCAGGAGCTTGCAATATTGTTGAGGAGATTAAAATCAGAAGGTCATAGAGCACTGATATTCACTCAGATGACAAAGATGCTTGACTTATTGGAGGCTTTCATTAATTTGTATGGTTACACTTACATGCGATTGGATGGATCAACACAACCAGAGGAGAGGCAGACATTAATGCAGCGCTTTAACACAAACCCCAAAATTTTTCTTTTCATTTTGTCAACCCGTAGTGGGGGTGTTGGTATCAATCTAGTTGGAGCTGACACAGTTATTTTCTATGATAGTGACTGGAATCCAGCTATGGATCAACAGGCTCAAGATAGGTGCCATAGGATTGGTCAGACACGTGAAGTTCACATCTATAGATTGATAAGTGAAAGCACCATTGAAGAGAATATTTTAAGGAAAGCAAAGCAGAAGCGTGCACTTGATGATTTAGTTATACAAAGTGGGGGTTATAATACTGAATTTTTCAAGAAGCTTGATCCTATGGAATTATTTTCAGGTCATAGGACACTTCAAGTGAAAAATATGCAGAAAGAGAAAAACCAGAACAGTGGGGCTGAAGTTTCAGTAACTAATGCAGATCTTGAGGCAGCATTAAAATATGCTGAAGATGAAGCAGATTATATGGCATTGAAGAAAGTTGAACTGGAAGAAGCTGTGGAAAACCAGGAGTTTGCAGAAGAAGCCATTGGGAGACTTGAGGATGATGAATATGTAAATGAGGATGATATGAAAGTTGATGAGCCTGCAGAATTAGGTGAATCAACTTCTAAGTCTAGTAAAGAGAACGCATTGATGTTAGTTGGAATTGATCTGAAGGAAGAAAGACCCCTCTCTGTAGCTCTTAAGGAAGATGAAGTTGACATGCTGGCTGATGTCAAACAGATGGCTGCAGCTGCAGCTGCATCTGGACAAGCCATCTCAGCCTTTGAGAATCAGCTACGTCCAATTGATCGATATGCCATTCGTTTTCTGGAGTTGTGGGATCCAATTATAGATAAAGCAGCATTAGAATCTGAAGTCATGATTGAGGATACAGAATGGGAATTGGATCGCATAGAGAAGTACAAGGAAGAGATGGAAGCTGAAATTGATGAGGATGAGGAACCTCTTGTATATGAAAGATGGGATGCTGATTTTGCGACTGAGGCATATCGACAGCAAGTAGAAGCCTTGGCTCAACATCAGTTAATGGAGGAACTTGAAAACGAGGCTAAGCAGAAAGAAGAGGCTGATGAAGAAAATCTTGATTCTGGAAAGATTCAAACGCCAAGGGATTCTAAGCCCAAACCTAAGAAGAAACCAAAGAAAACCAAGTTTAAATCCCTGAAGAAAGGATCTTTAGCCTCTGAATCCAAACCTATGAAAGAAGAGCAACAAACTGAGTCAATGTCTATAGATGATGAGATTGTCACTTGTCTGGACCTTGTGTCTCCAAATTCAACTATGCAGAAAAAACGTAAAAAGCCTAAATTTATGTCTGATGGTGAAGAAGAGAAGATATCAAAGAAGTCCAAAAAGACCAAGAGGGCTCCTGATGTCTGTGCTTCAGATTTAGATTATGCCTCGTCAGGTTTGCCAGATGAACTTGCAGAATCCAAGCAATGTGAAAGCGTGGTTGACTTTGAACAGAAACCTTCCAGTAGGAGTAAGATGGGAGGGAAAATATCCATAACTCCAATGCCAGTAAAGCGGATCCTGATGATCAAACCAGAAAGAGTGAAGAAGGGAAATGCTTGGACCAAAGATTTTGTTCCATCAGCTGACTTTTGGTTGCCGCAGGAAGATGCAATTTTATGTGCAATTGTTCATGAATATGGTTCTAACTGGAGCTTGGTTAGTGAAACACTCTATGGCATGACTGCTGGTGGGTCATACAGGGGGAGATATCGTCATCCTGTCCATTGCTGTGAGAGGTTCAGAGAACTAGTCCAAAAATATGTTTTGTCGACAGCAGACAATGCTAATCATGAGAGGATCAACAATACTGGCTCTGGAAAGTCTCTTCTTAAAGTTACCGAGGATAACATTCGGATGTTGTTAGATGTTGCTTCTGACCAGGAAAATCGGGAGTTACTACTGCAGAAGCATTTTTTTGCTCTGCTTTCATCTGTCTGGAAGGTGGTATCACATGTTGACCGAAGGCAAAATCCATCACTGATGCGAAATGGTCGCTATTTTGATCATAGTTTCTATACTTCCATTGGCCAGCACTCTCAGAATTCTCTGAAGAAGCCTTCTGAGAGGATGACATTCACTAATTTGGCCCAGAGCAGGAAGTTGTTAGCTGCTGCACTCGAGGACACTAGCAATAAGCAACAGGATGACAAAATCTCCCTTTCTAATCACAGGGACGATGCACCAATGATTGCAGATAAGATGGATGTGACACTGGAGTTCCTGAAAGAAGAGAGTGACACCCTATCTTCATTTCCATCTGTTATAAATTTATCAATACACGGGACAGAACCACTACCATCATTAAACTACCAAAATGGGGAAGATGATTTCCTTAGAGCTTGTTGTTCTATTGCTGAGGATCGTTTCAGGGAGGCAGCAAGAGCTTGTGAGGAAGACAGTTGTGTATGGGCTTCATCAGTATTCCCAACAAATGATGCAAGGTCCAGACCAGGATCTAAGAGTCAAGCTTCGGGAAAGCACAAGTCTTCCATCTCGGACTCCATTAAGCCTTCTAAATCAAAGTCCAAGCGAACTTCAATGGATCCTAGTGAGATGCGACACCAACGGGCTGAGCCATTATTCCAGTCAGCAGCACCACTTCAAGCCAAGGATCTGAGAGTTGATCTCAGGGCATCAGCTATGGACGAAGCTGGGACTGATGATATGGATTGCAATCTATCCTTTGGCTTAAATGAGGAAAATTCATTGGAAACGGAGAGTGTCGGTGTGGTCCCACATAACTACGTTGCTGGCTTGATCTCAGGCCTTGATGATTGTTCAGAATTTCCTGAATATACTGACATTGGATAG 6345 0.4112 MIASPFIRSLPFRNAIHVSLAFQIGKELEVKGKECDVIFGKVRKLMASKGPRSKIDHESRAKRQKALEAPREPRRPKTHWDHVIEEMVWLSKDFESERKWKLTQAKKVALRASKGMLDPATRGEKKMKEEEQRLRKVALNISKDVKKFWMKIEKLVLYKHQMELDEKKKKALDKQLEFLLGQTERYSTMLAENLVDAIKPVEKQLSEHHRSVQYKGVDEDIANKCNEVNAAEFQSDAIDNDDEYDIQSDDESEDDEQTLEEDEALITEEERQEELAALHDEIDLPLEELLKRYSVEKGKLIVETHHLSAECQVGSVSRESSPECSEDDTQIVRAGDGNENGKNLLSFSKVDISNSNVISGRRCDESNGGQTLSAENLSKDMTSQSENLKQISSERVTGNFAYDFSDEEEDGDFLLATEDKDDETTLSEEEKLEKVDAIDPKDEIALLQKESEMPVEKLLAMYKKYSSDEHGEDESDDASALSEDLLDSLLHEDDQKKDPAVFVDEDVKPDEHVAVVQSQVEEQHLEAPHENPEERESEILIADAAAAARSAQPTGNTFSTTKVRTKFPFLLKYPLREYQHIGLDWLVTMYEKRLNGILADEMGLGKTIMTIALLAHLACERGIWGPHLIVVPTSVMLNWETEFLKWCPAFKILTYFGSAKERKLKRQGWLKPNSFHVCITTYRLIIQDSKVFKRKKWKYLILDEAHLIKNWKSQRWQTLLNFNSKRRILLTGTPLQNDLMELWSLMHFLMPHVFQSHQEFKDWFSNPISGMVEGEEKVNKEVVDRLHNVLRPFILRRLKQDVEKQLPMKHEHVIYCRLSKRQRNLYEDFIASSETQATLASANFFGMISIIMQLRKVCNHPDLFEGRPIVSSFDMLGIDVQLSSSVCSMFSPSHFSTVDLKGLGFLFTHLDYSMTSWESDEVKAIETPASLIMECDDMNGLQVIRPELKYRKKLHGTNIFEEIQRAIWEERLREAKERAAAIAWWNSLRCKKRPTYSTTLRDLLTIRHPVYDIHQVKANPMSYMYSSKLADIILSPVERFQRMIDVVESFMFAIPAARVPPPVCWCSRSETPVFLHPSYKQKCSEVLSPLLSPIRPAIVRRQVYFPDRRLIQFDCGKLQELAILLRRLKSEGHRALIFTQMTKMLDLLEAFINLYGYTYMRLDGSTQPEERQTLMQRFNTNPKIFLFILSTRSGGVGINLVGADTVIFYDSDWNPAMDQQAQDRCHRIGQTREVHIYRLISESTIEENILRKAKQKRALDDLVIQSGGYNTEFFKKLDPMELFSGHRTLQVKNMQKEKNQNSGAEVSVTNADLEAALKYAEDEADYMALKKVELEEAVENQEFAEEAIGRLEDDEYVNEDDMKVDEPAELGESTSKSSKENALMLVGIDLKEERPLSVALKEDEVDMLADVKQMAAAAAASGQAISAFENQLRPIDRYAIRFLELWDPIIDKAALESEVMIEDTEWELDRIEKYKEEMEAEIDEDEEPLVYERWDADFATEAYRQQVEALAQHQLMEELENEAKQKEEADEENLDSGKIQTPRDSKPKPKKKPKKTKFKSLKKGSLASESKPMKEEQQTESMSIDDEIVTCLDLVSPNSTMQKKRKKPKFMSDGEEEKISKKSKKTKRAPDVCASDLDYASSGLPDELAESKQCESVVDFEQKPSSRSKMGGKISITPMPVKRILMIKPERVKKGNAWTKDFVPSADFWLPQEDAILCAIVHEYGSNWSLVSETLYGMTAGGSYRGRYRHPVHCCERFRELVQKYVLSTADNANHERINNTGSGKSLLKVTEDNIRMLLDVASDQENRELLLQKHFFALLSSVWKVVSHVDRRQNPSLMRNGRYFDHSFYTSIGQHSQNSLKKPSERMTFTNLAQSRKLLAAALEDTSNKQQDDKISLSNHRDDAPMIADKMDVTLEFLKEESDTLSSFPSVINLSIHGTEPLPSLNYQNGEDDFLRACCSIAEDRFREAARACEEDSCVWASSVFPTNDARSRPGSKSQASGKHKSSISDSIKPSKSKSKRTSMDPSEMRHQRAEPLFQSAAPLQAKDLRVDLRASAMDEAGTDDMDCNLSFGLNEENSLETESVGVVPHNYVAGLISGLDDCSEFPEYTDIG 2114
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere02g1359 2114 FunFam Protein PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1 821 886 - -
Dere02g1359 2114 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 555 797 IPR027417 -
Dere02g1359 2114 Coils Coil 1461 1481 - -
Dere02g1359 2114 Gene3D - 821 903 - -
Dere02g1359 2114 FunFam Photoperiod independent early flowering protein 1705 1766 - -
Dere02g1359 2114 PANTHER HELICASE SRCAP-RELATED 59 2014 - -
Dere02g1359 2114 MobiDBLite consensus disorder prediction 236 259 - -
Dere02g1359 2114 Pfam HSA domain 72 138 IPR014012 -
Dere02g1359 2114 FunFam Protein PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1 1082 1336 - -
Dere02g1359 2114 SMART bromneu2 68 139 IPR014012 -
Dere02g1359 2114 Gene3D - 1086 1335 IPR027417 -
Dere02g1359 2114 Pfam Helicase conserved C-terminal domain 1121 1229 IPR001650 -
Dere02g1359 2114 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 587 752 IPR014001 -
Dere02g1359 2114 MobiDBLite consensus disorder prediction 1990 2009 - -
Dere02g1359 2114 Gene3D - 544 820 IPR038718 -
Dere02g1359 2114 MobiDBLite consensus disorder prediction 1547 1561 - -
Dere02g1359 2114 CDD SF2_C_SNF 1105 1240 - -
Dere02g1359 2114 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1120 1270 IPR001650 -
Dere02g1359 2114 MobiDBLite consensus disorder prediction 1990 2034 - -
Dere02g1359 2114 MobiDBLite consensus disorder prediction 1606 1629 - -
Dere02g1359 2114 MobiDBLite consensus disorder prediction 49 76 - -
Dere02g1359 2114 CDD DEXQc_SRCAP 575 797 - -
Dere02g1359 2114 SMART ultradead3 571 764 IPR014001 -
Dere02g1359 2114 FunFam Photoperiod-independent early flowering 1 545 820 - -
Dere02g1359 2114 Coils Coil 374 394 - -
Dere02g1359 2114 Gene3D - 1693 1766 - -
Dere02g1359 2114 SMART helicmild6 1146 1229 IPR001650 -
Dere02g1359 2114 MobiDBLite consensus disorder prediction 2010 2033 - -
Dere02g1359 2114 MobiDBLite consensus disorder prediction 1562 1581 - -
Dere02g1359 2114 Coils Coil 252 272 - -
Dere02g1359 2114 ProSiteProfiles Myb-like domain profile. 1709 1762 IPR001005 -
Dere02g1359 2114 ProSiteProfiles HSA domain profile. 67 139 IPR014012 -
Dere02g1359 2114 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 799 1294 IPR027417 -
Dere02g1359 2114 Coils Coil 1334 1354 - -
Dere02g1359 2114 MobiDBLite consensus disorder prediction 1521 1546 - -
Dere02g1359 2114 Coils Coil 1509 1536 - -
Dere02g1359 2114 Pfam SNF2-related domain 592 864 IPR000330 GO:0005524|GO:0140658
Dere02g1359 2114 MobiDBLite consensus disorder prediction 232 259 - -
Dere02g1359 2114 MobiDBLite consensus disorder prediction 1521 1629 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere02g1359 Dere-ChrDere02 13045903 13061248 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere02g1359 595 867 RAD5 or RAD16-like Gene Family AT5G43530 29.503 9.76e-29 124
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Dere02g1359 SNF2_N 4.4e-70 CL0023
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere01g2510 01 39882121 39887171 Dere02g1359 02 13045903 13061248 CCT