Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere02g1358 ATGTTGGAGGAGCATCCGCGCAAGCCTGCGAATGGTTCAGGTTCAGGATCAGAAAGAGATGTAGAACATATGAGAGGGAGGCTTGAATCTGGAGTTAATGTTAATGGCGGTTCGAAAAGGTCCAAGCAAGAAATGGACTCCTTATCAACTGCTGTAGGAAGCAAATCGAAGCCATGTACCAAGTTTTTCAGCACTGCTGGCTGCCCGTTTGGTGAGAGCTGCCACTTCTTGCATTATGTTCCTGGTGGTTACAATGCCGTTGCCCAGATGATGAATTTAACGCCTGCTGTGCCTCCAGCATCTAGAAATATTGCAACCCCACCAGCTGTCCCTAATGGCTCTACAACACCTGTTAAAACCCGCTTATGCAACAAGTATAATACTGCTGAAGGCTGCAAATTTGGTGACAAATGTCATTTTGCCCATGGTGAATGGGAACTTGGCAAGCCTATTGCTCCATCAGTGGATGATCAACGTACCGTGGGCCCTATTTCAAGCCGTTTTGCAGGTCGAATGGAGCCTCCCCTGGGTCCTGTTGCTAGCTTTGGTGCCAATGCCACTGCCAAAATCAGTGTAGAAGCTTCATTGGCCGGAGCAATCATTGGAAAGGGTGGTGTGAACTCCAAGCAGATTTGCCGACAGACAGGAGCCAAGCTTTCAATTCGGGATCACGAATCAGATCCAAATCTTAGGAATATTGAACTGGAGGGTACTTTTGAGCAAATTAAGGAGGCGAGTAACATGGTAAAAGAGTTGCTGGTGACATTATCAATGTCTGCGCCACCTAAACCTCATGGTGTTACTGCAGCACCAGGCGGTCATGGAAGTAACTATAAGACAAAGCTGTGTGAGAATTTTGCTAAAGGATCTTGTACATTTGGAGAAAGATGTCACTTTGCACATGGGGCTGCAGAATTGCGTAAAGCAGGAGTATAA 936 0.4669 MLEEHPRKPANGSGSGSERDVEHMRGRLESGVNVNGGSKRSKQEMDSLSTAVGSKSKPCTKFFSTAGCPFGESCHFLHYVPGGYNAVAQMMNLTPAVPPASRNIATPPAVPNGSTTPVKTRLCNKYNTAEGCKFGDKCHFAHGEWELGKPIAPSVDDQRTVGPISSRFAGRMEPPLGPVASFGANATAKISVEASLAGAIIGKGGVNSKQICRQTGAKLSIRDHESDPNLRNIELEGTFEQIKEASNMVKELLVTLSMSAPPKPHGVTAAPGGHGSNYKTKLCENFAKGSCTFGERCHFAHGAAELRKAGV 311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere02g1358 311 FunFam Zinc finger CCCH domain-containing protein 273 308 - -
Dere02g1358 311 CDD KH-I_AtC3H36_like 188 253 - -
Dere02g1358 311 Gene3D K Homology domain, type 1 182 277 IPR036612 GO:0003723
Dere02g1358 311 FunFam Zinc finger CCCH domain-containing protein 112 149 - -
Dere02g1358 311 Gene3D - 114 149 - -
Dere02g1358 311 Gene3D - 278 309 - -
Dere02g1358 311 MobiDBLite consensus disorder prediction 1 54 - -
Dere02g1358 311 SMART c3hfinal6 277 303 IPR000571 GO:0046872
Dere02g1358 311 SMART c3hfinal6 53 80 IPR000571 GO:0046872
Dere02g1358 311 SMART c3hfinal6 117 144 IPR000571 GO:0046872
Dere02g1358 311 SUPERFAMILY CCCH zinc finger 54 80 IPR036855 GO:0046872
Dere02g1358 311 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 176 258 IPR036612 GO:0003723
Dere02g1358 311 ProSiteProfiles Type-1 KH domain profile. 185 249 - -
Dere02g1358 311 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 119 144 IPR000571 GO:0046872
Dere02g1358 311 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 278 302 IPR000571 GO:0046872
Dere02g1358 311 SUPERFAMILY CCCH zinc finger 117 148 IPR036855 GO:0046872
Dere02g1358 311 Pfam KH domain 188 251 IPR004088 GO:0003723
Dere02g1358 311 PANTHER CCCH ZINC FINGER/TIS11-RELATED 29 167 IPR045877 GO:0003729
Dere02g1358 311 ProSiteProfiles Zinc finger C3H1-type profile. 53 81 IPR000571 GO:0046872
Dere02g1358 311 ProSiteProfiles Zinc finger C3H1-type profile. 117 145 IPR000571 GO:0046872
Dere02g1358 311 SUPERFAMILY CCCH zinc finger 276 307 IPR036855 GO:0046872
Dere02g1358 311 Pfam RNA-binding, Nab2-type zinc finger 58 78 - -
Dere02g1358 311 ProSiteProfiles Zinc finger C3H1-type profile. 277 304 IPR000571 GO:0046872
Dere02g1358 311 SMART kh_6 184 254 IPR004087 GO:0003676
Dere02g1358 311 MobiDBLite consensus disorder prediction 34 54 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere02g1358 Dere-ChrDere02 13041124 13045669 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Dere02g1358 KH_1 2.5e-12 CL0007