Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere02g1349 ATGGTAGCGACGAAAGATTTGGACGCGGGTAGTTCGGCCACAGACGCAGAGTCCGTTAAAAGAGAACGGAAAAAGAAGACACATTCATTCATTCCATTTCGGAGGTACACATTCTCCTCTTTCGTTCAATCCCCTCCTTCCTTCTCCGTATTCCGTCATTATCATTGGAGCAATTATAACATGGCAGACGCTGAGGATATTCAGCCTCTTGTTTGTGACAATGGAACGGGAATGGTCAAGGCTGGGTTTGCCGGAGATGATGCTCCAAGGGCTGTATTCCCTAGCATTGTGGGTCGCCCTCGCCACACAGGTGTGATGGTTGGTATGGGACAGAAGGATGCGTATGTTGGGGATGAAGCTCAGTCAAAGAGAGGTATTTTGACTCTGAAATATCCAATCGAGCATGGCATTGTTAGCAATTGGGATGATATGGAAAAGATCTGGCATCACACTTTCTACAATGAGCTTCGTGTAGCTCCAGAAGAGCATCCTGTTCTCCTAACAGAAGCGCCTCTCAACCCCAAGGCTAACCGTGAGAAAATGACTCAGATTATGTTTGAGACCTTCAACACTCCAGCCATGTACGTCGCCATACAGGCCGTCCTTTCCCTTTACGCCAGTGGCCGCACAACTGGTATTGTTCTGGACTCTGGGGATGGTGTCAGCCACACAGTTCCCATCTATGAAGGCTATGCCCTCCCACATGCAATCTTGCGTTTGGACCTCGCAGGGCGTGATCTCACTGATGCCTTGATGAAAATCTTGACTGAGCGTGGATACTCTTTCACCACTAGTGCTGAGCGTGAAATTGTGAGAGACGTGAAGGAAAAACTAGCCTATATTGCGCTCGATTATGAACAAGAGCTGGAAACGGCAAAGACCAGCTCAACCGTTGAGAAGAGCTATGAGCTACCTGATGGGCAGGTGATCACAATAGGTGCTGAAAGATTCCGCTGCCCTGAAGTACTCTTCCAACCATCCATGATTGGGATGGAAGCTGCTGGCATACACGAAACAACATATAACTCAATCATGAAGTGCGACGTTGACATTAGAAAGGATCTCTATGGTAACATTGTCTTGAGTGGTGGTTCCACAATGTTCCCCGGCATTGCTGATAGGATGAGCAAGGAGATCACAGCTTTGGCACCAAGTAGCATGAAAATCAAGGTGGTGGCACCACCAGAGAGGAAGTACAGTGTCTGGATTGGAGGATCCATTTTGGCATCCCTCAGCACCTTCCAACAGATGTGGATTGCAAAGGCAGAGTACGATGAATCCGGTCCATCAATTGTTCACAGGAAATGCTTCTAA 1314 0.4795 MVATKDLDAGSSATDAESVKRERKKKTHSFIPFRRYTFSSFVQSPPSFSVFRHYHWSNYNMADAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYSFTTSAEREIVRDVKEKLAYIALDYEQELETAKTSSTVEKSYELPDGQVITIGAERFRCPEVLFQPSMIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAEYDESGPSIVHRKCF 437
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere02g1349 437 FunFam Major actin 319 400 - -
Dere02g1349 437 Gene3D - 70 431 - -
Dere02g1349 437 Pfam Actin 65 437 IPR004000 -
Dere02g1349 437 FunFam Actin, muscle 242 333 - -
Dere02g1349 437 PANTHER ACTIN 69 430 IPR004000 -
Dere02g1349 437 PRINTS Actin signature 298 314 IPR004000 -
Dere02g1349 437 PRINTS Actin signature 202 221 IPR004000 -
Dere02g1349 437 PRINTS Actin signature 177 190 IPR004000 -
Dere02g1349 437 PRINTS Actin signature 111 122 IPR004000 -
Dere02g1349 437 PRINTS Actin signature 88 97 IPR004000 -
Dere02g1349 437 PRINTS Actin signature 123 145 IPR004000 -
Dere02g1349 437 Gene3D - 200 400 - -
Dere02g1349 437 FunFam Putative actin-related protein 5 401 429 - -
Dere02g1349 437 ProSitePatterns Actins signature 2. 418 426 IPR004001 -
Dere02g1349 437 Gene3D Actin; Chain A, domain 4 242 333 - -
Dere02g1349 437 CDD NBD_sugar-kinase_HSP70_actin 70 243 - -
Dere02g1349 437 MobiDBLite consensus disorder prediction 1 21 - -
Dere02g1349 437 ProSitePatterns Actins and actin-related proteins signature. 166 178 IPR020902 -
Dere02g1349 437 FunFam Actin, alpha skeletal muscle 63 228 - -
Dere02g1349 437 ProSitePatterns Actins signature 1. 115 125 IPR004001 -
Dere02g1349 437 SUPERFAMILY Actin-like ATPase domain 66 215 IPR043129 -
Dere02g1349 437 SMART actin_3 67 437 IPR004000 -
Dere02g1349 437 SUPERFAMILY Actin-like ATPase domain 209 437 IPR043129 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere02g1349 Dere-ChrDere02 12994052 12997481 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere02g1349 61 437 Cytoskeleton Gene Families AT3G12110 97.613 0.0 771
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere02g1349 02 12994052 12997481 Dere02g1349 02 12994052 12997481 ECH