Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere02g1340 ATGGCACTTCATCCAAGCCGTCCATCTCCATCCATCAGAGGCAACGGCTTCTGCGCCTTCTTCCTCAGTTGCCAACACGTCTGGCGCAATCTTTCAGTCTTGGACATCCACCTTGTGATGGGGGAAGAGACATCTGATGTGATGAACCTGGATTTGAATCTGGGTCCCAGTCCAGAGCCACTCGCTGACTCTGTAACCGGTGAACATGCGATCTTAGTGGATGATTGGACTGAGCAGCATCTTCATAGAGTTAGTGAAGCTGCACGCTATAGGGCTCGACCACCATGGAGATGGCAGCATCTTGTCCCGCCTGAAGCGCAGCGGCATGTTCATCCGCCACCTGAATCCCCAAATATTCGAATGGAATCAAATCAATTTGTGGTGACCCCTGGTATTGGAACTACACTCCAGGCTGGTCAGGGCAGTGTTGAAGCTGAGCAAAGATCGGAGGGGGTACCAAAAGCATGTGAGGATAACAATGGCGTAGCAGAGGATGAGGGATCAGAGAAGAAGGATGATGTTGAAAAGGGTAGTATCAATGATGGGAGCTTTTTTGATTGTAATATCTGTTTGGACCTGGCCAAGGATCCTGTTGTGACTTGCTGCGGTCATTTGTTTTGTTGGCCTTGCCTCTTTCGATGGCTACATGTGCATTCAGATGCTAAGGAATGTCCTGTTTGCAAGGGTGAGGTGACTTACAAAAATGTTACCCCTATATATGGTCGTGGAAACAACAATGTCCAAGACCCTGAGGAGGATCCTACTATTAAAATACCTCTAAGGCCCCATGCAAGGCGTGTTGAGGGTTTGAGACAAACCATTCAGAGAACTGCTTTTGGATTCCCCATGGAGGAGATGATTAGGCGTATTGGAGGAAGAATTGATCTTACTCGGGATTTGGTTCAGCGGCACGACCCTGATAGTGTGCGTGAAACAGCAGAAAGAACTAGATCCTTGCTAAATAGGTTTTTGACATCTCGAGCCATTCGGAGAGAGCATAATCTTGGGGCATCCCCAGATGATGATGCAGTGGATTTAACAGAAAACAACGTGGACAGTCTTGATGCTGGGGATAATCGCAGGCTGCAATCTATTTTACTTCGAAGAACGCAGTCACACAGAGCAACACTTTCTACTCTTTCGTCAGCTTTGAGCTCTGCGGAGAGGGTGGTTGAGACATTTTTCCGTAGCCGTGCAGTACCTAGAAACCAAGAACAGCCTCCACCGGTGGATGATAGAGATTCTTATTCAAGCATTGCCGCTGTCATAAATTCGGAGAGTCAAGTGGACACAGCTGTAGAAATTGATTCCATGGTATCATTGTCAACATCCTCTTCGAGAAGAAGAAACGATGCCTCTAGAATGTCTGATGTAGATAGTGGAGATTCTCGTTCTCCTAGTGCTCCTAGGCCTAGGCGAAGACGTTTGAGCTGA 1434 0.4763 MALHPSRPSPSIRGNGFCAFFLSCQHVWRNLSVLDIHLVMGEETSDVMNLDLNLGPSPEPLADSVTGEHAILVDDWTEQHLHRVSEAARYRARPPWRWQHLVPPEAQRHVHPPPESPNIRMESNQFVVTPGIGTTLQAGQGSVEAEQRSEGVPKACEDNNGVAEDEGSEKKDDVEKGSINDGSFFDCNICLDLAKDPVVTCCGHLFCWPCLFRWLHVHSDAKECPVCKGEVTYKNVTPIYGRGNNNVQDPEEDPTIKIPLRPHARRVEGLRQTIQRTAFGFPMEEMIRRIGGRIDLTRDLVQRHDPDSVRETAERTRSLLNRFLTSRAIRREHNLGASPDDDAVDLTENNVDSLDAGDNRRLQSILLRRTQSHRATLSTLSSALSSAERVVETFFRSRAVPRNQEQPPPVDDRDSYSSIAAVINSESQVDTAVEIDSMVSLSTSSSRRRNDASRMSDVDSGDSRSPSAPRPRRRRLS 477
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere02g1340 477 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 167 369 IPR045103 GO:0005783|GO:0006511|GO:0061630
Dere02g1340 477 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 24 - -
Dere02g1340 477 ProSitePatterns Zinc finger RING-type signature. 202 211 IPR017907 -
Dere02g1340 477 Pfam Zinc finger, C3HC4 type (RING finger) 187 227 IPR018957 GO:0046872
Dere02g1340 477 ProSiteProfiles Zinc finger RING-type profile. 187 228 IPR001841 -
Dere02g1340 477 SMART ring_2 187 227 IPR001841 -
Dere02g1340 477 MobiDBLite consensus disorder prediction 439 477 - -
Dere02g1340 477 FunFam Zinc finger family protein 168 241 - -
Dere02g1340 477 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 157 261 IPR013083 -
Dere02g1340 477 SUPERFAMILY RING/U-box 183 240 - -
Dere02g1340 477 MobiDBLite consensus disorder prediction 139 175 - -
Dere02g1340 477 CDD RING-HC_AtRMA-like 185 228 - -
Dere02g1340 477 MobiDBLite consensus disorder prediction 159 175 - -
Dere02g1340 477 MobiDBLite consensus disorder prediction 334 355 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere02g1340 Dere-ChrDere02 12924766 12926837 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere02g1340 40 463 C3H Transcription Factor Family AT3G58030 51.011 5.79e-122 361