Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere02g1338 ATGGAGCTCGCGTTGAGCTTAGGAGAAGCACCCAAGGGGTTCTCTATTCTGGACAAGCCCACTAGAATGCCCAACAAGGATCCTGGTTTCTACATCGCCCTTGGGGAGGGTCTCAGTGGAAAAGCCTCGGAGGAGAAGACTGGGAATCACTCAGAAGCCGAAGATGAGAGAAGGGGCTCTTCAGACCCGCCTCTTCAGCTCGACCTCCTTCCTTTCACTCCCGTTCCTCGACCTCACCCATCTTCCCACCTTCGGATCCCTTGGCTCTCCGATTCATTGGGAGTTCAACGGCTTTCGTCAGACGGGGTGGCGAGGACCTTGGACGTAAACCGTTTACCGGTGGCAGCAGCGGAGGAGGCCGACGACGGTACTCCACTGTCGTCGTCCCCTAACAGTGTGTCGTCATTTCAGATGGACTTCTACATTAGGAATGGTAATGTAAGTAGCAGAAGCAAGAGAGAGCACGAGGGCGAGGCGGAGAGAGCCAGTTCTCGAGCCAGTGATGACGATGAAAACGGATCAACTCGAAAGAAACTCAGGCTCTCCAAGGAACAATCAGCTTTCCTGGAAGAGAGTTTCAAAGAACACACTACGCTTAATCCTAAGCAGAAACTCGCTCTGGCAAAACAGTTAAACCTTCGTCCCCGTCAAGTAGAAGTATGGTTTCAGAACAGAAGGGCAAGGACAAAGTTGAAGCAGACGGAAGTAGATTGCGAGTATTTAAAGAGATGCTGCGAGACACTGACAGAAGAGAATAGGAGGTTGCAGAAGGAACTGCAAGAACTAAGGGCTTTAAAGGCGTCTCAGCCATTCTACATGCAGCTTCCAGCGACCACACTCACCATGTGTCCCTCTTGTGAAAGGGTGGCCACCAATTCATGCTCTGCCTCCGCCACTACCCCCAACAACGCACCACTCATGTCTCTCTCTAACCCCAGAACAGTCCCTTTTGATCATAGTGGTCAATCCCAGTCTCAGTCTCAGCCTCAGCCTCAGCCTCAGCGCCATCGCACTCCTTCATCATGA 1026 0.5214 MELALSLGEAPKGFSILDKPTRMPNKDPGFYIALGEGLSGKASEEKTGNHSEAEDERRGSSDPPLQLDLLPFTPVPRPHPSSHLRIPWLSDSLGVQRLSSDGVARTLDVNRLPVAAAEEADDGTPLSSSPNSVSSFQMDFYIRNGNVSSRSKREHEGEAERASSRASDDDENGSTRKKLRLSKEQSAFLEESFKEHTTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENRRLQKELQELRALKASQPFYMQLPATTLTMCPSCERVATNSCSASATTPNNAPLMSLSNPRTVPFDHSGQSQSQSQPQPQPQRHRTPSS 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere02g1338 341 Coils Coil 238 268 - -
Dere02g1338 341 ProSiteProfiles 'Homeobox' domain profile. 172 232 IPR001356 GO:0003677
Dere02g1338 341 MobiDBLite consensus disorder prediction 147 181 - -
Dere02g1338 341 Pfam Homeodomain 176 230 IPR001356 GO:0003677
Dere02g1338 341 SUPERFAMILY Homeodomain-like 167 233 IPR009057 -
Dere02g1338 341 ProSitePatterns 'Homeobox' domain signature. 207 230 IPR017970 GO:0000981|GO:0006355
Dere02g1338 341 MobiDBLite consensus disorder prediction 148 181 - -
Dere02g1338 341 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 50 303 - -
Dere02g1338 341 SMART halz 232 275 IPR003106 GO:0006355|GO:0043565
Dere02g1338 341 Pfam Homeobox associated leucine zipper 232 266 IPR003106 GO:0006355|GO:0043565
Dere02g1338 341 CDD homeodomain 176 233 IPR001356 GO:0003677
Dere02g1338 341 MobiDBLite consensus disorder prediction 14 86 - -
Dere02g1338 341 MobiDBLite consensus disorder prediction 43 62 - -
Dere02g1338 341 SMART HOX_1 174 236 IPR001356 GO:0003677
Dere02g1338 341 FunFam Homeobox-leucine zipper protein 18 161 237 - -
Dere02g1338 341 Gene3D - 180 230 - -
Dere02g1338 341 MobiDBLite consensus disorder prediction 295 341 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere02g1338 Dere-ChrDere02 12913954 12915371 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere02g1338 105 288 Homeobox Transcription Factor Family AT3G60390 60.606 2.88e-69 217
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Dere02g1338 Homeodomain 2.7e-15 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere01g2525 01 40086877 40088260 Dere02g1338 02 12913954 12915371 CCT
Dere02g1338 02 12913954 12915371 Dere02g1338 02 12913954 12915371 ECH