Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere02g1320 ATGGACAAGGCTTCAGAGGGTAGTAGTAGAGAGACCCACGACTTCATGAACGTGGACTCTTTCTCACAGCTACCCTTCATCCGCCCTCCTCCTCTTAAAGAAAAGCCCATCAGGCTTTTCGGCATAGAATTCGGCACCGGGGACCCTCCCGCCACCGCAGCCGTTGACGAGTCCGAGTCAGCCGAAGACTCGAATGGCAAGGACAACACGACCACCACGACCGAGAACGGCGAGAGTAACCGGAGATTCGAATGCCATTACTGCTGCAGAAACTTCCCAACTTCCCAAGCCTTAGGTGGCCACCAAAACGCTCACAAACGAGAGCGCCAGCACGCCAAACGAGCCCACCTTCACATCTCTGAGGCTCAAGTCTATGGCCTCGTCAACTACAGATCCTTCACTTCAGGACCACCTCCGACGTTAACCACACCAATGCCTTCTGCTAATAGTAGTGCAAGGTTTTATGGAAGCCCATATCATCATCTTCACCAGCCCATCAATGGAAGCCCCTTGGCCTTGTGGCGAATCCCCAACCTCCAAACTAACCCTACTTTCAACCGTGACCGTTCGTTGCATCCATTGCCCTTGTTTTCTGGCGAGGATATGAACATGAGGGCCTCATCGCTGCAGCTTGGTGGGTCTGCTTCACAGTTACAAAACCGGTACGTCTATGATTCCAAACCAAGCGTCCAAGACCATGTGAGTTTGGATCTTCATCTGTAA 723 0.5242 MDKASEGSSRETHDFMNVDSFSQLPFIRPPPLKEKPIRLFGIEFGTGDPPATAAVDESESAEDSNGKDNTTTTTENGESNRRFECHYCCRNFPTSQALGGHQNAHKRERQHAKRAHLHISEAQVYGLVNYRSFTSGPPPTLTTPMPSANSSARFYGSPYHHLHQPINGSPLALWRIPNLQTNPTFNRDRSLHPLPLFSGEDMNMRASSLQLGGSASQLQNRYVYDSKPSVQDHVSLDLHL 240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere02g1320 240 Pfam C2H2-type zinc finger 82 107 - -
Dere02g1320 240 ProSiteProfiles Zinc finger C2H2 type domain profile. 83 110 IPR013087 -
Dere02g1320 240 SUPERFAMILY beta-beta-alpha zinc fingers 80 111 IPR036236 -
Dere02g1320 240 ProSitePatterns Zinc finger C2H2 type domain signature. 85 105 IPR013087 -
Dere02g1320 240 Gene3D Classic Zinc Finger 58 126 - -
Dere02g1320 240 PANTHER ZINC FINGER PROTEIN GIS 1 240 IPR044291 GO:0003700|GO:0009739|GO:0010026|GO:0010090
Dere02g1320 240 MobiDBLite consensus disorder prediction 1 78 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere02g1320 Dere-ChrDere02 12703494 12704216 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere02g1320 1 240 C2H2 Transcription Factor Family AT3G58070 42.007 1.54e-47 156
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere01g2539 01 40246267 40247028 Dere02g1320 02 12703494 12704216 CCT
Dere02g1320 02 12703494 12704216 Dere02g1320 02 12703494 12704216 ECH