Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere02g1313 ATGAATGATAAATTGGGGTTGTATTTGCCAACTAATGATCGGGTGAATTATGGTGGGCCAGCTGCTGGATTTCATGGTGGTAGTTCCTCTAAGCCTGATCTTGGGAAGCAGGGATACGGTTCTAGTGGTCGAACTGGTGGTGATCATGCACTTGGTGAGCAAGAAAACATGGGCATTAACTTCGAAGCTTATGATGATATTCCTGTGGAGACTAGTGTGGGGAATGTGCCTTCCCCAGTAAATACATTTGCAGAAATAGACTTAGGTGAGGCATTGAATCAAAATATACGACGGTGCACTTATGTTAAACCAACTTCAGTTCAGAGGTATGCCACACCAATTTCCCTTGCTGGGCGAGATTTGATGGCTTGTGCTCAGACGGGATCAGGCAAGACAGCTGCATTTTGCTTTCCTATTATAAGTGGAATCATGAGGGATAATGTTCAAAGACCACATGTAGCACGGGCTGCTTTTCCTTTGGCACTAATTTTCTCCCCCACCAGGGAACTTTCACGTCAGATACATGATGAGGCGAGGAAGTTTTCCTATCAAACTGGTGTCAAGTGTGAATGTGCTTGTTTAGAAATGACCTTTCCTTTGAGTTGTAAAAGGGAAAGGGAAGGGCAGCTGCGGGACCTTGAGAGAGGAGTTGATATTCTTGTAGCAACTCCAGGACAATTGGTAGATTTGCTTGAGAGAGATAGGGTTTCATTGGAAATGATCAGATATTTGGCTCTTGATGAAGCAAATCGGATGCTAGATATGGGTTTTGAGCCTAAAATAAGGAAGATAGTTGAACAAATGGATATGCCTCCTCGAGGAAATGATTTTCACAACTCTTTTGTACTCATAATATATGTTGCAATTTTCAACTGCTTGCGGAGACTTGCATCAGATTTTCTTTCAAATTATGTATTTCTGGCTGTTCTAAGGGTTGGTTCGAGTACTGATCTAATTGCTCAAAGAGTAGAATCTGTCCTCGAGTCTGACAAGAGAAGCCATCTTATGGACCTTCTTCACGTTCAGAGGGACAATGGAATTAATGGCAAGCAAAGTTTGACATTAGTTTTTGTGGAAACAAAGAAAGGAGCTGATGCATTGGAACACCGGTTGTGTACCAATGGGTTTCCTGCAGCTAGCATTCACGTGGCAACAGATGTTGCAGCACGTGGTCTTGACATTCCACATGTAGTTCACGTGGTAAATTTAAATCTGCCTGACAACATTGACGATTATGTGTGCCGGATAGGAAGAACAGGTCGTGCTGATAAAATGGGATTAGCAACAGCATTTTTAATTGACAATGATTTGTCATTAGCTAGGCCTTTGGCTGATCATCGCAAGAAGCAAATCAAGAAGCGCCTGCAATGGCTTACAAGATATGCAGCAAGAGCTTCTTACGGTGGTGGCAACCGAAATAGATGGTTCAGAGGAGGAGCCTGTTTTGGTTGCTGCGATTTGAGGAAGGATAACTCATTTCATAAAGGAACAGCAACAGAATATTATAATGGAACTGGCGGATATGGATTTCCTGCCACTTATAGTGAATGGTATAGTCCTGGTGTATCAAGTGCTTGGGACTAG 1584 0.4274 MNDKLGLYLPTNDRVNYGGPAAGFHGGSSSKPDLGKQGYGSSGRTGGDHALGEQENMGINFEAYDDIPVETSVGNVPSPVNTFAEIDLGEALNQNIRRCTYVKPTSVQRYATPISLAGRDLMACAQTGSGKTAAFCFPIISGIMRDNVQRPHVARAAFPLALIFSPTRELSRQIHDEARKFSYQTGVKCECACLEMTFPLSCKREREGQLRDLERGVDILVATPGQLVDLLERDRVSLEMIRYLALDEANRMLDMGFEPKIRKIVEQMDMPPRGNDFHNSFVLIIYVAIFNCLRRLASDFLSNYVFLAVLRVGSSTDLIAQRVESVLESDKRSHLMDLLHVQRDNGINGKQSLTLVFVETKKGADALEHRLCTNGFPAASIHVATDVAARGLDIPHVVHVVNLNLPDNIDDYVCRIGRTGRADKMGLATAFLIDNDLSLARPLADHRKKQIKKRLQWLTRYAARASYGGGNRNRWFRGGACFGCCDLRKDNSFHKGTATEYYNGTGGYGFPATYSEWYSPGVSSAWD 527
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere02g1313 527 Gene3D - 44 308 IPR027417 -
Dere02g1313 527 SMART helicmild6 365 423 IPR001650 -
Dere02g1313 527 Gene3D - 309 383 IPR027417 -
Dere02g1313 527 CDD SF2_C_DEAD 319 432 - -
Dere02g1313 527 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 64 306 IPR027417 -
Dere02g1313 527 MobiDBLite consensus disorder prediction 20 52 - -
Dere02g1313 527 Pfam DEAD/DEAH box helicase 105 269 IPR011545 GO:0003676|GO:0005524
Dere02g1313 527 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 81 109 IPR014014 GO:0003724
Dere02g1313 527 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 112 265 IPR014001 -
Dere02g1313 527 Pfam Helicase conserved C-terminal domain 382 422 IPR001650 -
Dere02g1313 527 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 382 447 - -
Dere02g1313 527 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 308 462 IPR001650 -
Dere02g1313 527 SMART ultradead3 100 322 IPR014001 -
Dere02g1313 527 Gene3D - 384 466 IPR027417 -
Dere02g1313 527 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 241 440 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere02g1313 Dere-ChrDere02 12601877 12605805 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere02g1313 65 451 Eukaryotic Initiation Factors Gene Family AT3G19760 25.845 7.61e-34 130