Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere02g1309 ATGTTGGTCCACTACGACAACACGGCTTCATGTGAACCCATGCGGCCGCAAACACCTGAACAAAACCAACCCAGGCAGAATCGCGCTTTGCCGATTGTTCAACAGTTAGGGTCTAAGTACAACTGCAGCATGAGGGGCAGAAGCTACAGTTACAGTCCCTCACCTCCTAGGGGTTATGGCAGAAGGCACCGTAGTCCTAGCCCCAGAGGTCGGTATGGAGGCCGTGGTAGGGATTTGCCAACAAGTCTTCTGGTTCGGAACCTTCACAGAGATTGCCGGGCTGAAGATCTGCGTGGACCTTTTGGCCACTTTGGTCCTCTCAAGGACATTTACCTACCTCGAGATTATTATACTGGGGAGCCCCGTGGCTTTGGATTTGTCCAATATGTTGATCCAGCTGATGCTGCTGATGCTAAATATCACATGGATGGTCAAGTCCTACTTGGTCGTGAGTTGACTGTGGTGTTTGCTGAGGAGAACAGAAAGAAGCCTGCAGAAATGAGAGCAAGAGAACGTTATAGTGGTCGGTCATATGATCGTAGGAGATCTCCACCTCGTTATTCTCACTCACCACACTATGCTCGAGCCTATCCTTGTAGTCCAGAGTATTCACCTTCTCCGAGACGAAGACGCTATTCCAGGTCAATATCACCAAGAGACCAAAGGTATAGGGAGCGATCATACTCGAGATCTCCTTATGGATCAAGAAGCCGAAGTCGAAGCAGGAGCTTCAGCAGGAGCAGGAGTCGAAGTCTAGACTACTCTAGGTGA 771 0.4994 MLVHYDNTASCEPMRPQTPEQNQPRQNRALPIVQQLGSKYNCSMRGRSYSYSPSPPRGYGRRHRSPSPRGRYGGRGRDLPTSLLVRNLHRDCRAEDLRGPFGHFGPLKDIYLPRDYYTGEPRGFGFVQYVDPADAADAKYHMDGQVLLGRELTVVFAEENRKKPAEMRARERYSGRSYDRRRSPPRYSHSPHYARAYPCSPEYSPSPRRRRYSRSISPRDQRYRERSYSRSPYGSRSRSRSRSFSRSRSRSLDYSR 256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere02g1309 256 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 83 152 IPR000504 GO:0003723
Dere02g1309 256 Gene3D - 77 191 IPR012677 -
Dere02g1309 256 SMART rrm1_1 82 155 IPR000504 GO:0003723
Dere02g1309 256 MobiDBLite consensus disorder prediction 207 231 - -
Dere02g1309 256 MobiDBLite consensus disorder prediction 11 27 - -
Dere02g1309 256 MobiDBLite consensus disorder prediction 43 78 - -
Dere02g1309 256 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 81 159 IPR000504 GO:0003723
Dere02g1309 256 PANTHER TRANSFORMER-2 SEX-DETERMINING PROTEIN-RELATED 80 245 - -
Dere02g1309 256 MobiDBLite consensus disorder prediction 1 27 - -
Dere02g1309 256 MobiDBLite consensus disorder prediction 161 186 - -
Dere02g1309 256 MobiDBLite consensus disorder prediction 161 256 - -
Dere02g1309 256 SUPERFAMILY RNA-binding domain, RBD 81 186 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere02g1309 Dere-ChrDere02 12557701 12561013 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere02g1309 81 187 Eukaryotic Initiation Factors Gene Family AT4G34110 28.704 9.59e-08 50.8