Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere02g1300 ATGGAAAAGAGGGCAGCCGCGGGCACAACCATCTTCCTCTGTCAGTCTCTCTTTGTCGTCGGTCAGCTCAGGATGGAGTCTCAAGTGAAGCATGCTGTGGTTGTTAAAGTCATGGGTCGTACTGGATCCAGAGGGCAAGTGACTCAAGTTAGAGTCAAGTTTTTGGATGATCATAACCGTTACATCATGAGGAACGTGAAAGGACCAGTGAGAGAAGGAGACATTCTTACCTTACTTGAGTCTGAAAGGGAAGCCAGAAGACTGCGCTAG 270 0.4852 MEKRAAAGTTIFLCQSLFVVGQLRMESQVKHAVVVKVMGRTGSRGQVTQVRVKFLDDHNRYIMRNVKGPVREGDILTLLESEREARRLR 89
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere02g1300 89 Pfam Ribosomal protein S28e 28 88 IPR000289 GO:0003735|GO:0005840|GO:0006412
Dere02g1300 89 Gene3D - 24 89 IPR012340 -
Dere02g1300 89 ProSitePatterns Ribosomal protein S28e signature. 80 88 IPR028626 -
Dere02g1300 89 FunFam 40S ribosomal protein S28 23 89 - -
Dere02g1300 89 SUPERFAMILY Nucleic acid-binding proteins 25 89 IPR012340 -
Dere02g1300 89 Hamap 30S ribosomal protein S28e [rps28e]. 25 89 IPR000289 GO:0003735|GO:0005840|GO:0006412
Dere02g1300 89 PANTHER 40S RIBOSOMAL PROTEIN S28 25 89 IPR000289 GO:0003735|GO:0005840|GO:0006412
Dere02g1300 89 CDD S1_S28E 30 89 IPR000289 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere02g1300 Dere-ChrDere02 12429005 12431640 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere02g1300 25 89 Cytoplasmic Ribosomal Protein Gene Family AT5G03850 90.769 1.18e-36 116
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere02g1300 02 12429005 12431640 Dere02g1300 02 12429005 12431640 ECH