Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere02g1285 ATGCTTAGCTTCAAGAGCTTATTGTCCCGTACTCGAAGGACCAAGAAAAAGAATACAAACAAGCGCAAACTCAAACGTCAATTTCCTTTGGGCAAGCGAAACTGCATTTCCCATAAAATTGAATTACCAGACCTAGAAGAAGAAGTAATAGAAGATACTGAAGGTTTCAGGCTCAAAAGCTCTGCCCCATCACACGCATATGGGGTTCAACCTTTGGGCAATCTTTATCTCAACCCAGGTTCTATCAACTCCAGAGATACAGGTTTAGGTAGTCTCCATTCACTGACAGATGAGCTTGTTCTTGAAATTCTGGGATTGTTGAGTGGGAACGACTTGGGGGTTTTAGCGACTGTAAGCAAGTCTTTTTATGTTTTCACCAACCATGAACCCATTTGGAGGAATCTTGTGTTGGAAAATCTTAGTGGTGGTTTTCGGTACGAAGGATCTTGGAAATCTACTTATATTGGTGCTTACTACCCTTCATTTGATATCTCAAATATCACTGTTCAGAATTTGAAAGTGAGAGACTTTTATTCTGATTATCTTTTTCAGAGTTGGCTCTGTGCTAATCTTGAAATGAAACCTGAATGGCTGGTAAGAGATAATATAGTTAGAAAGAAGGGCATTTCAGTTGAAGAATTTGTAAAGGATTTTGAGGAGCTTAATAAGCCGGTATTGTTGGAAGGATGTCTTGATAATTGGGAAGCATTGAAAAAATGGGATAGAGATTATTTGGTGCAATTGTGTGGTGATGTTAAGTTGTCAGTCGGACCAGTTGAGATGAAGCTTGAAGACTATTTTGGGTACGCGGATCAAGTGAGAGAAGAAAGACCATTGTATTTGTTTGATCCAAATTTTGCTGAAAAAGTTCCAAATTTCGGTTCACAATATGATATTCCAGCACACTTCCAGGAGGACTTGTTTAGTGTCTTGGGCAAAGAGAGACCTGACTACAGGTGGATTATTATTGGACCAGCTGGATCAGGATCATCTTTCCACGTTGATCCAAATTCGACTTCAGCTTGGAATGCAGTAATCAAGGGATCCAAGAAGTGGGTATTATTTCCTCCTGATGTGATTCCACCTGGAGTTCATCCTAGCCCTGATGGTTCAGAGGTTGCATCTCCTGTTTCAATAATTGAGTGGTTCATGAACTTTTATGGCGCAACAAAAAGTTGGAAAAAGAAGCCTATTGAGTGCATATGTAAAGCTGGGGAGGTTGTCTTTGTGCCTAATGGATGGTGGCATTTGGTGATCAACTTGGAGGAGTCCATAGCTATAACCCAAAATTATGTCAGTAGGAGAAACTTGCTAAATGTCCTGGATTTTCTTAAGAGGCCAAACGCAAGCGTACTGGTATCTGGAACAAGAGATCGAGTGAATTTGTACGAGAAGTTTAAAAATGCTATTGAGGATTCTTTTCCTGGGATAATTGATGAAGTGATCCTAAAAGAGAATGAGAAAAAGATCCAGCAGAAGAAACTTTCCTTCTGGGATTCTGTCACAGATTCCAAAGTCGGAGCATTCAAGTTTTCTTTTTAA 1542 0.3982 MLSFKSLLSRTRRTKKKNTNKRKLKRQFPLGKRNCISHKIELPDLEEEVIEDTEGFRLKSSAPSHAYGVQPLGNLYLNPGSINSRDTGLGSLHSLTDELVLEILGLLSGNDLGVLATVSKSFYVFTNHEPIWRNLVLENLSGGFRYEGSWKSTYIGAYYPSFDISNITVQNLKVRDFYSDYLFQSWLCANLEMKPEWLVRDNIVRKKGISVEEFVKDFEELNKPVLLEGCLDNWEALKKWDRDYLVQLCGDVKLSVGPVEMKLEDYFGYADQVREERPLYLFDPNFAEKVPNFGSQYDIPAHFQEDLFSVLGKERPDYRWIIIGPAGSGSSFHVDPNSTSAWNAVIKGSKKWVLFPPDVIPPGVHPSPDGSEVASPVSIIEWFMNFYGATKSWKKKPIECICKAGEVVFVPNGWWHLVINLEESIAITQNYVSRRNLLNVLDFLKRPNASVLVSGTRDRVNLYEKFKNAIEDSFPGIIDEVILKENEKKIQQKKLSFWDSVTDSKVGAFKFSF 513
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere02g1285 513 FunFam F-box protein At1g78280 183 433 - -
Dere02g1285 513 Gene3D Cupin 161 433 - -
Dere02g1285 513 SMART fbox_2 95 135 IPR001810 GO:0005515
Dere02g1285 513 MobiDBLite consensus disorder prediction 1 24 - -
Dere02g1285 513 SUPERFAMILY F-box domain 86 156 IPR036047 GO:0005515
Dere02g1285 513 Gene3D - 84 160 - -
Dere02g1285 513 SMART cupin_9 279 448 IPR003347 -
Dere02g1285 513 Pfam Cupin-like domain 212 431 IPR041667 -
Dere02g1285 513 SUPERFAMILY Clavaminate synthase-like 203 446 - -
Dere02g1285 513 ProSiteProfiles JmjC domain profile. 288 448 IPR003347 -
Dere02g1285 513 MobiDBLite consensus disorder prediction 9 24 - -
Dere02g1285 513 PANTHER ARGININE DEMETHYLASE AND LYSYL-HYDROXYLASE JMJD 89 511 - -
Dere02g1285 513 ProSiteProfiles F-box domain profile. 89 135 IPR001810 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere02g1285 Dere-ChrDere02 12296673 12299437 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere02g1285 80 437 Glycosyltransferase AT1G78280 37.802 8.45e-78 260
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Dere02g1285 Cupin_8 4.3e-25 CL0029