Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere02g1273 ATGGGAAATAACTGTGTTGGATCGAGAACTTCAAAGGATAGAAAAGTTACCACAGTTGCGAGTTCAACTTGGTGTAGTCCATTGAGAAATGTTATGGTTTGCAATACCCGCAAAGCAACTTCGGGTGCAGCATCAAGTAATAATCAGCCAAATGCCTCAGACACTGTTCAAAACAAGCCTCCAGAGGTAGTTAAAATTGAGAAGAACGACATAAAACCAGTACTTGAGGAACCCACCAAGAAGGACCAAGTCCCAGACACTAGTAAATCTTCAGAAACATTAAGGCACGTGGAGGAGCCAAGGGTAATAGCTCCAAGAACAACAGTTCAAAACAATAAGGCACGTGCAGAACCAAAGAAGCCCCACAATGTGAAGAGGCAAGCAGCGGCAGGGCTTCAAGCAGAGTCTGTGTTGCAAACAAAAACAGGAAATCTGAAGGAGTTCTACAGTTTGGGAAGGAAGCTTGGGAATGGGCAATTCGGGACGACATTCCATTGTGTGGAGAAGGACACAGGGAAAGAGTATGCTTGCAAGTCAATAGCGAAGAGGAAATTGGTGACAGAGGAAGATGTAGAGGATGTGAGGAGGGAGGTTCGGATAATGCATCACTTGGCAGGGTGCCCTGTTGTGGTATCCATAAAAGGGGCTTATGAGGATGCCGTGGCTGTTCATGTTGTGATGGAGTTATGTGCAGGGGGTGAGCTGTTTGATAGGATTGTGGAGAGAGGGCATTACACAGAGAGAAAAGCAGCTAAATTAGCCAGGACTGTAGTTAGTGTTATAGAATCTTGTCACTCACTTGGAGTAATGCATCGCGATCTTAAGCCAGAGAATTTTCTCTTCGTTAATGAGCAGGAAGATTCGCCCCTTAAGGTTATCGATTTTGGTTTGTCTACTTTCTTCAAACCAGGAGATATATTTACTGACGTGGTAGGAAGCCCATACTTCGTTGCACCAGAAGTTCTGCGGAAGCGTTATGGTCCAGAAGCTGATGTGTGGAGTGCTGGTGTGATCATATTCATTCTGTTATGTGGGGTGCCTCCGTTTTGGGCTGAAACGGAGCAAGAGATATTTAAGGAGGTATTGCATGGTCAACTTGATTTCTCGTCGGATCCCTGGCCTAGTATTTCTGAAAGTGCAAAGGACTTGGTCAGGAAGATGCTTGTTAGAGATCCTAGCAAAAGAATAACAGCCCATGAAGTTCTTTGTCATCCTTGGATTCAAGTTGATGGAGCAGCTCCTGATAAGCCTCTTGACCCTGCAGTTCTGAGTCGCTTGAAGCAGTTCTCTGCAATGAACAAGCTCAAAAAAATGGCCCTTAGAGTCATTGCACAAAACTTGTCTGAAGAAGAAATTGCAGGGTTGAAAGAAATTTTTAAGATGATAGACACAGACAACAGTGGTCAAATTTCTTTTGAAGAACTCAAGGATGGGTTGAAAAGATTTGGTGCAAACCTCGATGAATCTGAGATCCACGATCTAATGCAAGCTGCAGACGTTGATAATAGTGGCACAATAGACTATGTAGAATTCATAGCAGCAACATTACATTTCAACAAAGTACTGAGGGAAGATAACTTAGTTGCTGCTTTCCAATATTTTGATAAAGACGGAAGTGGCTACATCACTCAAGATGAGCTTCAACGAGCTTGTGAAGAATTTGGTCTTGAGAATGTGCGCTTGGAGGAGATGATCCGTGAAGCTGATCAAGATAATGATGGCCGAATAGACTACAATGAATTTGTGGCTATGATGCAGAGAGGCAATGCAGATTTGGGTAAGAAGGGTGTAAAGAAAAACAATAGTATTAGCGTTGCAGGTAGGGAAGCATTATCGCTAGCTGTTGAGTTGGGGGTCCATAATTAA 1866 0.4346 MGNNCVGSRTSKDRKVTTVASSTWCSPLRNVMVCNTRKATSGAASSNNQPNASDTVQNKPPEVVKIEKNDIKPVLEEPTKKDQVPDTSKSSETLRHVEEPRVIAPRTTVQNNKARAEPKKPHNVKRQAAAGLQAESVLQTKTGNLKEFYSLGRKLGNGQFGTTFHCVEKDTGKEYACKSIAKRKLVTEEDVEDVRREVRIMHHLAGCPVVVSIKGAYEDAVAVHVVMELCAGGELFDRIVERGHYTERKAAKLARTVVSVIESCHSLGVMHRDLKPENFLFVNEQEDSPLKVIDFGLSTFFKPGDIFTDVVGSPYFVAPEVLRKRYGPEADVWSAGVIIFILLCGVPPFWAETEQEIFKEVLHGQLDFSSDPWPSISESAKDLVRKMLVRDPSKRITAHEVLCHPWIQVDGAAPDKPLDPAVLSRLKQFSAMNKLKKMALRVIAQNLSEEEIAGLKEIFKMIDTDNSGQISFEELKDGLKRFGANLDESEIHDLMQAADVDNSGTIDYVEFIAATLHFNKVLREDNLVAAFQYFDKDGSGYITQDELQRACEEFGLENVRLEEMIREADQDNDGRIDYNEFVAMMQRGNADLGKKGVKKNNSISVAGREALSLAVELGVHN 621
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere02g1273 621 ProSiteProfiles EF-hand calcium-binding domain profile. 486 521 IPR002048 GO:0005509
Dere02g1273 621 ProSitePatterns Protein kinases ATP-binding region signature. 155 182 IPR017441 GO:0005524
Dere02g1273 621 SMART efh_1 560 588 IPR002048 GO:0005509
Dere02g1273 621 SMART efh_1 526 554 IPR002048 GO:0005509
Dere02g1273 621 SMART efh_1 490 518 IPR002048 GO:0005509
Dere02g1273 621 SMART efh_1 454 482 IPR002048 GO:0005509
Dere02g1273 621 CDD STKc_CAMK 148 406 - -
Dere02g1273 621 Pfam EF-hand domain pair 455 515 IPR002048 GO:0005509
Dere02g1273 621 Pfam EF-hand domain pair 527 586 IPR002048 GO:0005509
Dere02g1273 621 FunFam Calcium-dependent protein kinase 1 415 589 - -
Dere02g1273 621 CDD EFh 455 514 IPR002048 GO:0005509
Dere02g1273 621 Gene3D Transferase(Phosphotransferase) domain 1 235 413 - -
Dere02g1273 621 ProSitePatterns Serine/Threonine protein kinases active-site signature. 269 281 IPR008271 GO:0004672|GO:0006468
Dere02g1273 621 ProSitePatterns EF-hand calcium-binding domain. 569 581 IPR018247 -
Dere02g1273 621 SUPERFAMILY Protein kinase-like (PK-like) 148 408 IPR011009 -
Dere02g1273 621 ProSiteProfiles EF-hand calcium-binding domain profile. 450 485 IPR002048 GO:0005509
Dere02g1273 621 CDD EFh 527 586 IPR002048 GO:0005509
Dere02g1273 621 MobiDBLite consensus disorder prediction 39 97 - -
Dere02g1273 621 SMART serkin_6 149 407 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere02g1273 621 Gene3D - 414 590 - -
Dere02g1273 621 ProSiteProfiles EF-hand calcium-binding domain profile. 560 591 IPR002048 GO:0005509
Dere02g1273 621 Pfam Protein kinase domain 149 407 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere02g1273 621 MobiDBLite consensus disorder prediction 61 97 - -
Dere02g1273 621 ProSitePatterns EF-hand calcium-binding domain. 463 475 IPR018247 -
Dere02g1273 621 SUPERFAMILY EF-hand 446 587 IPR011992 -
Dere02g1273 621 ProSiteProfiles EF-hand calcium-binding domain profile. 522 557 IPR002048 GO:0005509
Dere02g1273 621 Gene3D Phosphorylase Kinase; domain 1 151 234 - -
Dere02g1273 621 ProSiteProfiles Protein kinase domain profile. 149 407 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere02g1273 621 FunFam Calcium-dependent protein kinase 1 151 234 - -
Dere02g1273 621 ProSitePatterns EF-hand calcium-binding domain. 499 511 IPR018247 -
Dere02g1273 621 PANTHER SERINE/THREONINE-PROTEIN KINASE 139 581 - -
Dere02g1273 621 MobiDBLite consensus disorder prediction 39 58 - -
Dere02g1273 621 FunFam Calcium-dependent protein kinase SK5 235 419 - -
Dere02g1273 621 ProSitePatterns EF-hand calcium-binding domain. 535 547 IPR018247 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere02g1273 Dere-ChrDere02 12195647 12199671 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere02g1273 1 606 EF-hand Containing Proteins AT3G10660 65.319 0.0 860
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Dere02g1273 Pkinase 1.2e-72 CL0016