Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere02g1264 ATGGCCATGCAAACTGTTAATTTCAAAGAACACGATGGAATTTTCCCCAATTCCGTTGGGCAATTGTCAGCTGTAACATCAGCCCCCTGGTGGACTGTCGTTGGATCTCAATCGGTCCACCAGGAGTCCTGTAGCCAAATGAAGCCTTTTTCATTGGAGTTTCCCGACTATGTTGACCAACCTACTGCCTCAAAGCAACCAGGAAGAGCAGCTCATCAAGCGTTGGATAAAGGACACACAACGTTCACTATCTTCCCGGATGGTTGCGAAATGTCGGATGATGCACAGAAGCATCAGGCAGCCTTATCACTTCACTCATCACCTCCTGAACCCCGCAGTCATTTTGAGCTAAAATTTAGTCAGCCTATGATCTGTTCAAAATATCCTTATATGGATCAATTTTATGGGCTCATCTCAACTTATGGACCTCAAATTTCGGGCCGTATAATGCTGCCACTTAACTTGACATCTGATGATGGGCCAATTTATGTAAATGCTAAGCAATACCATGGAATCATCAGACGTCGGCAGTCTCGTGCAAAAGCTGTACTTGAGAATAAATTGACAAAACGTCGCAAGCCCTATATGCATGAGTCACGTCACCTCCATGCAATGAGGCGACCAAGAGGATGCGGGGGTCGCTTCTTGAACACAAGAACTTTGAAAAATGGGAATGGTGAAAGTGGAAGGGCAATGAATAAAATTGGTGAGGGTCTATTTCAGTGTAGTGGCTCTCAGAGTTCTGAAATTCTGCAATCGGAGGGTGGAACTCTAAATTCATGGAAGGAAAACAACGGCAGCAGTCCAAATGTTTCAGGGTCAGAGGTGACTAGCATGTATGCACGTGCAACTTTTGATGGCTTTGCTATCAATCATGCTGGATCTACTGTCCACCCTCTAGCGGATATGATAGATAGTGGAGGTGGCATTGTCATGCCTGCGAAATGGGTTGCAGCAGCAGCTAACTGCTGCAAACTTTGA 981 0.4546 MAMQTVNFKEHDGIFPNSVGQLSAVTSAPWWTVVGSQSVHQESCSQMKPFSLEFPDYVDQPTASKQPGRAAHQALDKGHTTFTIFPDGCEMSDDAQKHQAALSLHSSPPEPRSHFELKFSQPMICSKYPYMDQFYGLISTYGPQISGRIMLPLNLTSDDGPIYVNAKQYHGIIRRRQSRAKAVLENKLTKRRKPYMHESRHLHAMRRPRGCGGRFLNTRTLKNGNGESGRAMNKIGEGLFQCSGSQSSEILQSEGGTLNSWKENNGSSPNVSGSEVTSMYARATFDGFAINHAGSTVHPLADMIDSGGGIVMPAKWVAAAANCCKL 326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere02g1264 326 PRINTS CCAAT-binding transcription factor subunit B signature 161 183 IPR001289 GO:0003700|GO:0006355
Dere02g1264 326 PRINTS CCAAT-binding transcription factor subunit B signature 192 215 IPR001289 GO:0003700|GO:0006355
Dere02g1264 326 ProSiteProfiles NF-YA/HAP2 family profile. 158 218 IPR001289 GO:0003700|GO:0006355
Dere02g1264 326 SMART cbf3 157 218 IPR001289 GO:0003700|GO:0006355
Dere02g1264 326 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 161 215 IPR001289 GO:0003700|GO:0006355
Dere02g1264 326 Coils Coil 321 326 - -
Dere02g1264 326 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 41 279 IPR001289 GO:0003700|GO:0006355
Dere02g1264 326 Gene3D - 158 220 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere02g1264 Dere-ChrDere02 12120881 12127598 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere02g1264 1 326 CCAAT-HAP2 Transcription Factor Family AT3G05690 42.254 4.93e-59 191
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Dere02g1264 CBFB_NFYA 5.3e-26 No_clan