Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere02g1263 ATGAACGACTTGTTGTCCAGCTCCATCTATAACGCCCGCGGCGAGCAAGTGTCGCCCGACGACAACCGCCACCATGTCATCCAGATGACGGAGTTGACAGACGGCGTCAACCTGGACAAGTTTTTTGAGGAAGTGGAGTTGCTTAAGAAGGAGCTCCAGGAGCTGGAGAGCCTGAACCAGAGCCTGCGTAGCTCTCACGAACAGAGCAAGACACTTCACAAGGCTAAGGCAGTGAAGGACCTTCGCTCTCGGATGGACGCCGACGTGGCTCTGGCTCTCAAGAAAGCCAAGCTCATCAAGGTTCGACTAGAGGCACTGGACCGCTCCAGCGAAGTTAGCCGTAGCATGCCGGGTTGCGGACCCGGATCGTCTTCGGACCGCACTCGGACCTCCGTGGTCAACGGGTTGAGAAAGAAGTTGAAAGACTCCATGGAGAGCTTCAACAACCTCAGGCAACAAATATCCTCCGAGTACAGGGAGACAGTACAACGTAGGTACTACACTGTCACCGGCGAGAACCCTGACGACAAAACCATTGACCTCCTCATCTCTACTGGTGAGAGTGAGAATTTCCTACAGAAAGCGATCCAGGAGCAAGGGAGAGCTAGCGTACTGGACACGATCCATGAGATTCAAGAGAGGCATGACGCGGTGAAGGATATAGAGAGAAGTCTGAATGAGCTGCACCAGGTGTTTTTGGACATCGCAGTGTTGGTCCAATCCCAAGGGGAACAACTGGATGATATAGAGAGCCACGTGGCAAGGGCTGATTCGTACGTGAGAGGTGGGGTGCAGCAGTTACAGGTTGCGAGGAAGCACCAGAAGAACTCCCGCAAATGGACCTGCATTGGCATTATAATACTGCTCATTATCATATTGGTCATAGTTCTCCCAATTGTTTTAAGAAAATGA 912 0.5219 MNDLLSSSIYNARGEQVSPDDNRHHVIQMTELTDGVNLDKFFEEVELLKKELQELESLNQSLRSSHEQSKTLHKAKAVKDLRSRMDADVALALKKAKLIKVRLEALDRSSEVSRSMPGCGPGSSSDRTRTSVVNGLRKKLKDSMESFNNLRQQISSEYRETVQRRYYTVTGENPDDKTIDLLISTGESENFLQKAIQEQGRASVLDTIHEIQERHDAVKDIERSLNELHQVFLDIAVLVQSQGEQLDDIESHVARADSYVRGGVQQLQVARKHQKNSRKWTCIGIIILLIIILVIVLPIVLRK 303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere02g1263 303 SUPERFAMILY t-snare proteins 36 263 IPR010989 GO:0016020|GO:0016192
Dere02g1263 303 PANTHER SYNTAXIN 58 292 IPR045242 -
Dere02g1263 303 Pfam SNARE domain 244 296 IPR000727 -
Dere02g1263 303 MobiDBLite consensus disorder prediction 116 131 - -
Dere02g1263 303 Gene3D - 197 301 - -
Dere02g1263 303 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 208 270 IPR000727 -
Dere02g1263 303 FunFam Qa-SNARE, Sso1/Syntaxin1-type, SYP12A-group 35 165 - -
Dere02g1263 303 FunFam Syntaxin 132 201 301 - -
Dere02g1263 303 Pfam Syntaxin 40 243 IPR006011 GO:0016020
Dere02g1263 303 SMART SynN_4 33 159 IPR006011 GO:0016020
Dere02g1263 303 SMART tSNARE_6 203 270 IPR000727 -
Dere02g1263 303 Coils Coil 133 157 - -
Dere02g1263 303 Coils Coil 38 68 - -
Dere02g1263 303 Gene3D - 36 168 - -
Dere02g1263 303 CDD SynN 38 195 IPR006011 GO:0016020
Dere02g1263 303 CDD SNARE_syntaxin1-like 207 268 - -
Dere02g1263 303 ProSitePatterns Syntaxin / epimorphin family signature. 214 253 IPR006012 GO:0005484|GO:0006886|GO:0016020
Dere02g1263 303 MobiDBLite consensus disorder prediction 112 131 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere02g1263 Dere-ChrDere02 12118583 12119709 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere02g1263 33 282 SNARE and Associated Proteins AT3G11820 77.200 2.46e-144 407