Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere02g1261 ATGAATGATTTGTTCTCCGGCTCCTTCTCTCGCCTCCATAGAGAGCAGGCATCGCCGGACCATCATGTAATCGAGATGAGTGCAGCGACGTCGACGACGTCCACCGGCGGCGTCAACCTTGACAAGTTTTTCGACGGCGTGGAGTTGATCAAGGACGAGCTCAAGGAGCTGGATCGCCTAAACCAGAACCTCCTGAACTCTCACGAGCAGAGCAAGACCCTTCACAATGCAAAGGCCGTCAAGGACCTCCGGTCTCGTATGGACGGCGATGTGGCGGTTGCACTGAAGAAAGCCAAGCTCATCAAGGTCAAGTTGGAGGCCCTGGAGCGATCCAACGCAGCCAACCGGAGCCTGCCGGGTTGCGGGCCCGGATCCTCGTCGGACCGAACCCGCACCTCTGTGGTCAACGGGTTGAAGAAAAAGCTAAAGGACTCCATGGAGAGCTTCAATAACCTCAGGCAGCAGATCTCATCGGAATACCGGGAGACTGTACAACGCAGGTATTTCACAGTCACCGGCGAGAACCCCGATGAGAAGACCATCGACCTCTTGATCTCTACAGGTGAGAGCGAGACTTTCCTTCAGAAAGCCATCCAAGAGCAAGGTAGAGGTAGGATTCTGGATACTATCAACGAAATTCAAGAGAGGCATGGTGCTGTGAAAGAGATAGAGAAGAATCTGAAGGAGTTGCATCAAGTGTTCCTTGACATGGCAGTGTTGGTGGAATCTCAAGGGGAGCAATTGGATGACATAGAGAGCCACGTGGCGAGAGCTCAATCATTTGTGAGGAGTGGAGCTCAGCAATTGCAGACTGCAAGGAAGCACCAGAAAAACACCAGGAAATGGACCTGTTACGCTATTACGATTCTCCTAGTAATCATCTTATTTGTGGTTCTCTTCACTGTTAGACCATGGCAGAATAATGGTGGTGGTGGTGGTAACAATAATCAGCCAACTTCATCTCAAACACCTCCACCTCCTCCTCCTGCAGCTTAA 996 0.5161 MNDLFSGSFSRLHREQASPDHHVIEMSAATSTTSTGGVNLDKFFDGVELIKDELKELDRLNQNLLNSHEQSKTLHNAKAVKDLRSRMDGDVAVALKKAKLIKVKLEALERSNAANRSLPGCGPGSSSDRTRTSVVNGLKKKLKDSMESFNNLRQQISSEYRETVQRRYFTVTGENPDEKTIDLLISTGESETFLQKAIQEQGRGRILDTINEIQERHGAVKEIEKNLKELHQVFLDMAVLVESQGEQLDDIESHVARAQSFVRSGAQQLQTARKHQKNTRKWTCYAITILLVIILFVVLFTVRPWQNNGGGGGNNNQPTSSQTPPPPPPAA 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere02g1261 331 Gene3D - 207 303 - -
Dere02g1261 331 SMART SynN_4 35 161 IPR006011 GO:0016020
Dere02g1261 331 Gene3D - 38 170 - -
Dere02g1261 331 Pfam Syntaxin 42 245 IPR006011 GO:0016020
Dere02g1261 331 Coils Coil 135 159 - -
Dere02g1261 331 SMART tSNARE_6 205 272 IPR000727 -
Dere02g1261 331 MobiDBLite consensus disorder prediction 309 331 - -
Dere02g1261 331 SUPERFAMILY t-snare proteins 38 265 IPR010989 GO:0016020|GO:0016192
Dere02g1261 331 CDD SynN 40 197 IPR006011 GO:0016020
Dere02g1261 331 CDD SNARE_syntaxin1-like 209 271 - -
Dere02g1261 331 Pfam SNARE domain 246 298 IPR000727 -
Dere02g1261 331 ProSitePatterns Syntaxin / epimorphin family signature. 216 255 IPR006012 GO:0005484|GO:0006886|GO:0016020
Dere02g1261 331 PANTHER SYNTAXIN 62 294 IPR045242 -
Dere02g1261 331 FunFam Qa-SNARE, Sso1/Syntaxin1-type, SYP12A-group 37 167 - -
Dere02g1261 331 FunFam Syntaxin 132 203 303 - -
Dere02g1261 331 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 210 272 IPR000727 -
Dere02g1261 331 Coils Coil 47 70 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere02g1261 Dere-ChrDere02 12114001 12115512 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere02g1261 29 330 SNARE and Associated Proteins AT3G11820 75.806 7.53e-160 447