LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Dere02g1257	ATGGATCACGAGATTGATGTTCCTCTCTTCTTTATCTGCCCCATATCTCTAGAAATCATGAAGGACCCAGTGACTGTGTCCACCGGTATCACCTACGACAGAGAGGGTATTGAGAAATGGATGTTCTCTGGGAAAAACAAGACTTGCCCAGTTACCAAACAACCCCTCTCAGTATCAGACTACACTGATCTGACCCCCAACCACACCCTTCGCCGATTGATTCAAGCCTGGTGTACTATGAACGCTTCTCACGGCATTGAAAGGATTCCCACACCCAAGCCTCCTATCACCAAAACCCAGATTATCAAACTCATCGAAGACGCTTCCCGATCACCTCAGTCCCAGATTCAATGTCTCAGGACACTCAAATCCATCGCTTCCGACAGCGAAACAAATAAACGCTGCGTAGAAGCTTCTGGTGCTGTTGAGTTCTTAGCATCTGTTATATCCACAGCCTCACCCCAAGAGGAGGCTAACCAAGACGAGGCCTTAGTTATCCTCCACAGTCTCCGCGTGTCTGAAGCTACCTTAAAATCTCTCGTAGCTTTCAAAAACGGACAGTTCATTGACTCCTTAATAGCAGTGATGCAGAGGGGGGTCTACGAGTCACGAGCCTGCGCAGTGCAACTATTGAATTCAATGTTCCAAGTGGCTCATATGCAGTTATTCAACGCAAGACAAGAATTATTCGTTGAATTAGTACAAATCCTCAAAGATCAAATCTCCCAGCAGGCTACATATGCGACGCTACAAACACTAATCCAACTCTGCCGTTGGGGGAGAAACAGGAATAGAGCAGTAAAAGCAGGGGGTGTTTGGGTATTAATAGAACTTCTTCTGGATTGTAACGAGAGAAAGGTGTGTGAGATGATGCTAGTGGTGTTGGAGATTCTGTGTGGGTGTGCCGAGGGAAGGGCAGAGTTGTTGAGTCACGGGGCAGGGGTTGCCGTCGTGTCGAAGAAGATTCTTAGGGTTTCGACGATGGCGAACGGAAGGGCTGTGAGGATTTTGCTGTCTATTTCCAAGTTCTCTGCGACTCCAAGTGTTGTGCAGGAGATGATACAACTGGGTGTGGTGGGGAAGCTTGCTTTGGTGATGCAAATGGAGAGTGGTAGTAGGACCAAGGAGAGAGCAAGAGAGATTCTCAAACTGCATGCCCAAGCATGCAGGAATTCTTCATGCATACCCGGCAGTTTGGGTTCGTACTTTGCTTGA	1215	0.4774	MDHEIDVPLFFICPISLEIMKDPVTVSTGITYDREGIEKWMFSGKNKTCPVTKQPLSVSDYTDLTPNHTLRRLIQAWCTMNASHGIERIPTPKPPITKTQIIKLIEDASRSPQSQIQCLRTLKSIASDSETNKRCVEASGAVEFLASVISTASPQEEANQDEALVILHSLRVSEATLKSLVAFKNGQFIDSLIAVMQRGVYESRACAVQLLNSMFQVAHMQLFNARQELFVELVQILKDQISQQATYATLQTLIQLCRWGRNRNRAVKAGGVWVLIELLLDCNERKVCEMMLVVLEILCGCAEGRAELLSHGAGVAVVSKKILRVSTMANGRAVRILLSISKFSATPSVVQEMIQLGVVGKLALVMQMESGSRTKERAREILKLHAQACRNSSCIPGSLGSYFA	404

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Dere02g1257	404	CDD	RING-Ubox_PUB	8	60	IPR045210	-
	Dere02g1257	404	PANTHER	WDSAM1 PROTEIN	3	396	IPR045185	GO:0061630
	Dere02g1257	404	FunFam	RING-type E3 ubiquitin transferase	1	87	-	-
	Dere02g1257	404	SUPERFAMILY	RING/U-box	4	85	-	-
	Dere02g1257	404	ProSiteProfiles	U-box domain profile.	6	84	IPR003613	GO:0004842\|GO:0016567
	Dere02g1257	404	SMART	Ubox_2	10	77	IPR003613	GO:0004842\|GO:0016567
	Dere02g1257	404	Gene3D	-	99	396	IPR011989	-
	Dere02g1257	404	Pfam	U-box domain	7	81	IPR003613	GO:0004842\|GO:0016567
	Dere02g1257	404	SUPERFAMILY	ARM repeat	101	372	IPR016024	-
	Dere02g1257	404	Gene3D	Zinc/RING finger domain, C3HC4 (zinc finger)	1	88	IPR013083	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Dere02g1257	Dere-ChrDere02	12028723	12029937	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Dere02g1257	1	399	U-box Gene Family	AT2G35930	56.188	1.19e-159	454