LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Dere02g1256	ATGTCAACTATTTTAGCCGCATTCTCTTACCACGTTATCCTCCTTCCTCCACAGCTTTACCTCCTTTTGTGTCGCGTCTGGTATTCAATGGATGAAACTGAAGTTCCCCAGGACTTCATCTGCCCCATATCCCTCCAAATCATGAAAGATCCCGTAACTGCCATGACAGGCATCACATACGACCGAGACAGCATCGAACGCTGGCTATCCACCACCTCTTCCACTTGCCCCGTCACCAAACTCCCTCTCCCAAAACACTCCGATCTCACCCCTAACCACACCCTCCGTCGTCTAATCCAAGCCTGGTGCCTCGACAATGGCTCCCTTCCCATTCCCGCCTCTAACCCACCTCAGAACGAGCTTCAAGTCCTCCACCTCCTCAAACACCTCCATGATCCCCACTCCAACCTTAACGCGCTTAGAGAGTTGGAATTGCTCGCAGTCCAGAACCAGAGGAATAACAAGTCTTTGGTAGAAGCTGGAGTGCCTAAGGCCATGATCGACTTCATTGTAGCTTGTTTTAGAAGGGCCCAAATCGACCAGGGTCTTGAAGAAGCTCTCAGTATACTCCAGTTTGTTAAGCTTACTCCAGCGGACATAGAAGATCATGAACAAGTATTGGATGCTCTAACCTGGACTTTGGGTTGTGAAACTGAGAACTCTATTACTGTGAGATCTCATGCCGTTCTTGTGCTCAAAACAATCATCAACAAGGTTGCCCATAGCTTTTTGGAGAGACTCAAACCCGAGTTCTTCCAAAGAATTGTGAAGGTTCTACGGAATGGGATTACGCAACAGGGGATGAACGCTGCTTTGCATGTTTTATTAAGCGCATGTCCCTGGGGAAGAAATCGGACGACGATGGTGGAAGCTGGAGTGGTTTTTGAACTAATAGAGGTTGAAATGGGGGCACCTGAGAGGAGAACCTCGGAGCTAACGTCGGCGATACTATTTCACGTGTGTTGTTGTGCAGAGGGTAGAGCCCAGTTTGTTAGTCACGGGGGAGCAATTGCTGTGTTAACGGAGCGAATGATGCAGGTATCGCAGGCAGTGGATGATAGAGCTGTGTTTGTTCTGTCATTGATATCTGAGTTTTGTGGGACACAGTCGGTGATTGGAGAGATGCTCAAGGTTGGAACGGTGTCGAAGCTTTGTATGCTGCTTCAGGCGGATCATCCTACATACCTGAAACACAAAGCAAGGGAGATATTGAAGTCTCACTCTGAGGTTTGGACGATTTCCCCTTGCTTTCCAGGCCATTCTTTTTACGCAAGCTTCCATGGGTGA	1287	0.4856	MSTILAAFSYHVILLPPQLYLLLCRVWYSMDETEVPQDFICPISLQIMKDPVTAMTGITYDRDSIERWLSTTSSTCPVTKLPLPKHSDLTPNHTLRRLIQAWCLDNGSLPIPASNPPQNELQVLHLLKHLHDPHSNLNALRELELLAVQNQRNNKSLVEAGVPKAMIDFIVACFRRAQIDQGLEEALSILQFVKLTPADIEDHEQVLDALTWTLGCETENSITVRSHAVLVLKTIINKVAHSFLERLKPEFFQRIVKVLRNGITQQGMNAALHVLLSACPWGRNRTTMVEAGVVFELIEVEMGAPERRTSELTSAILFHVCCCAEGRAQFVSHGGAIAVLTERMMQVSQAVDDRAVFVLSLISEFCGTQSVIGEMLKVGTVSKLCMLLQADHPTYLKHKAREILKSHSEVWTISPCFPGHSFYASFHG	428

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Dere02g1256	428	SUPERFAMILY	ARM repeat	124	394	IPR016024	-
	Dere02g1256	428	SMART	Ubox_2	38	102	IPR003613	GO:0004842\|GO:0016567
	Dere02g1256	428	PANTHER	WDSAM1 PROTEIN	32	418	IPR045185	GO:0061630
	Dere02g1256	428	Gene3D	-	102	411	IPR011989	-
	Dere02g1256	428	ProSiteProfiles	U-box domain profile.	34	109	IPR003613	GO:0004842\|GO:0016567
	Dere02g1256	428	Gene3D	Zinc/RING finger domain, C3HC4 (zinc finger)	28	101	IPR013083	-
	Dere02g1256	428	FunFam	RING-type E3 ubiquitin transferase	35	108	-	-
	Dere02g1256	428	SUPERFAMILY	RING/U-box	29	108	-	-
	Dere02g1256	428	Pfam	U-box domain	35	106	IPR003613	GO:0004842\|GO:0016567
	Dere02g1256	428	CDD	RING-Ubox_PUB	36	89	IPR045210	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Dere02g1256	Dere-ChrDere02	12019680	12020966	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Dere02g1256	31	417	U-box Gene Family	AT3G11840	37.813	4.24e-93	286