Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere02g1253 ATGGCGACGTACTTTCATGGTAATTCTGAAATCCAACCACCCGATGGCCTCCAAACGCTCGTTCTCATGAACCCCTACATCCACTACTCCGACACGCCGCCACCTCCGCCACCACCGCACCCCAGCAACCTCGTCTTCCTCAACTCCATCGCAGCTGGCAACAACTCGCTCACTCCCCAAAGCCTCACCCACGCGCCAACCACTCATACCCAGCAATTCGTGGGCATCCCTCTTCCCGTAACCACCACCACCACCACCACCGCCTCCCAAGACCTCAACCAGCAACACTCCATGCACGCCCATCACGATGTCTCTGCCTTGCATGGATTTGTGCCCCGCATGCAGTACAATCTCTGGAACACAATCGACCCAAACGCGGTGGCACGTGAGACTCCACGCGCTCAGCAGGGACTGTCGCTGAGCCTGTCGTCCCAGCAAGCTGGAATGGGGTCTTTCCGTGTGGATCGTGACGTTGCATCCCAGGTTCAAGCGCCTGCTATGTCTGGCGAGGACGTGCGGGTGTCAGGTGGGTCGTCGTCTTCGGCTTCTGGGGTGACCAACGTTAACGGCGTTTCGGGGATTCAGAGTGTGCTTTTGAGCTCCAAATACTTGAAAGCAGCACAGGAGCTTCTGGACGAGGCCGTTAACGTTAACAACGGCATCAAGACTGAATTGGGAAAGAAGAGCAGTGGTGGGAACCACACTAAGGCCACTGGAGAGTCATCTGGAACAGCAGCTAGTGGCGACGGTTCTGCTGGAGGGGAAGGAAGCGCTAAACGTGCCTCTGAGCTATCTGCTGCGGAGAGACAAGAAATTCAGATGAAGAAGGCTAAGCTAATCAGCATGCTTGATGAGGTGGAGCAGAGGTACAGGCAGTATCACCAGCAGATGCAGATTGTGATTTCGTCATTTGAGCAAGCTGCGGGAATTGGGTCAGCGAGAACATACACTGCCCTTGCGCTGCAAACAATCTCCAAGCAGTTTCGGTGCTTGAAAGATGCCATAACAGCCCAAATTCGAGCTGCTAATAAGAGCTTAGGAGAAGAAGACTGCTTTGGAGCTAAAATTGAAGGTTCGAGGCTCAAGTACGTGGACCATCACCTGCGCCAACAGCGTGCTCTGCAACAGTTGGGAATGATCCAACACAATGCTTGGAGACCCCAGAGAGGATTGCCTGAAAGATCTGTTTCTGTTCTTCGTGCTTGGCTCTTCGAGCACTTCCTCCACCCTTATCCCAAGGATTCAGACAAACACATGCTTGCTAAACAAACGGGGCTCACCAGGAGCCAGGTTTCAAATTGGTTCATTAATGCTCGAGTTCGGCTCTGGAAACCAATGGTGGAAGAAATGTATACGGAGGAGATGAAGGAGCATGAACAGAATGGGTCTGAAGAGAAATCAAGCAAGTGCAGTGAAGATCCAACAATTAAAATTGCAGCCCCACATCAGACAGGTGCTGCCTCTGAATCTGACGCTAAAAGCTTAAATTCCAAACTAGACGTGTCTTCAAACCAGAACACTCCAACAGTTTCAGTTTCTAAACCATTAATAGCATCACCGACTGGGGGCAATGTCAGAAACCAGTTTGGGTTCAGCTTCATGGGGTCATCAGAGCTAGAGGGCATCACCCAAGGAAGTCCGAAGAAACCAAGAAACAATGAAATTCTGCACTCTTCAATAAACATGGATGTCAAGCCCAATGAGGCAAATAATGAACAGCTTTCAATGAAATTTGGAGATGAGAGGCAGGGGAGAGATGGATACTCTTTCATGGGAACCCAAGCAAACTTTATTGGAGGTTTTGGGCAATACCCAATTGGGGATATAGGAAGGTTTGACGCAGAACAGTTTACTCCAAGGTTTTCAGGTAATGGAGTTTCCCTGACTCTTGGTCTTCCCCACTGTGACACATTATCAGGAAGCCATCAAACATTTCTCCCAAACCAGAACATTCAACTGGGTAGAAGATTGGAGATGGGTGAACCAAACGAGTTTGGAGCCATAAACCCTTCCACTTCTCACTCTTCAGCTGCATTTGAGAACATGAACATGCAGAACCCAAAGAGGTTTGCTGCACAATTGTTGCCAGACTTTGTCACCTAA 2103 0.5012 MATYFHGNSEIQPPDGLQTLVLMNPYIHYSDTPPPPPPPHPSNLVFLNSIAAGNNSLTPQSLTHAPTTHTQQFVGIPLPVTTTTTTTASQDLNQQHSMHAHHDVSALHGFVPRMQYNLWNTIDPNAVARETPRAQQGLSLSLSSQQAGMGSFRVDRDVASQVQAPAMSGEDVRVSGGSSSSASGVTNVNGVSGIQSVLLSSKYLKAAQELLDEAVNVNNGIKTELGKKSSGGNHTKATGESSGTAASGDGSAGGEGSAKRASELSAAERQEIQMKKAKLISMLDEVEQRYRQYHQQMQIVISSFEQAAGIGSARTYTALALQTISKQFRCLKDAITAQIRAANKSLGEEDCFGAKIEGSRLKYVDHHLRQQRALQQLGMIQHNAWRPQRGLPERSVSVLRAWLFEHFLHPYPKDSDKHMLAKQTGLTRSQVSNWFINARVRLWKPMVEEMYTEEMKEHEQNGSEEKSSKCSEDPTIKIAAPHQTGAASESDAKSLNSKLDVSSNQNTPTVSVSKPLIASPTGGNVRNQFGFSFMGSSELEGITQGSPKKPRNNEILHSSINMDVKPNEANNEQLSMKFGDERQGRDGYSFMGTQANFIGGFGQYPIGDIGRFDAEQFTPRFSGNGVSLTLGLPHCDTLSGSHQTFLPNQNIQLGRRLEMGEPNEFGAINPSTSHSSAAFENMNMQNPKRFAAQLLPDFVT 700
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere02g1253 700 Pfam Associated with HOX 197 336 IPR006563 -
Dere02g1253 700 Coils Coil 269 296 - -
Dere02g1253 700 MobiDBLite consensus disorder prediction 223 267 - -
Dere02g1253 700 MobiDBLite consensus disorder prediction 223 248 - -
Dere02g1253 700 Pfam Homeobox KN domain 402 441 IPR008422 GO:0003677|GO:0006355
Dere02g1253 700 Gene3D - 388 467 - -
Dere02g1253 700 FunFam BEL1-like homeodomain protein 9 388 450 - -
Dere02g1253 700 MobiDBLite consensus disorder prediction 487 521 - -
Dere02g1253 700 Coils Coil 204 224 - -
Dere02g1253 700 CDD homeodomain 385 446 IPR001356 GO:0003677
Dere02g1253 700 SMART HOX_1 385 449 IPR001356 GO:0003677
Dere02g1253 700 MobiDBLite consensus disorder prediction 481 521 - -
Dere02g1253 700 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 98 469 - -
Dere02g1253 700 SMART prehox3 192 337 IPR006563 -
Dere02g1253 700 ProSiteProfiles 'Homeobox' domain profile. 382 445 IPR001356 GO:0003677
Dere02g1253 700 MobiDBLite consensus disorder prediction 164 186 - -
Dere02g1253 700 SUPERFAMILY Homeodomain-like 386 452 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere02g1253 Dere-ChrDere02 12005855 12008423 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere02g1253 1 699 Homeobox Transcription Factor Family AT2G35940 50.065 0.0 538
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Dere02g1253 POX 1.8e-50 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere01g2615 01 40946596 40949067 Dere02g1253 02 12005855 12008423 CCT
Dere02g1253 02 12005855 12008423 Dere02g1253 02 12005855 12008423 ECH