Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere02g1234 ATGTCTGGCGGCGTTGGAGCTTCTAACCACCAGGCATCGCCGCCACTGGAGGCTTCTAACGTCCAAAATCGGCCGCCACAGAAGCTTCACCTGGCGTTCGCATCGACTAAGCCGCCATTTGTCTCCCCGGATGATTATCACAGCTTCTCCGCTTCCGACTCTAGGAGAGCCGCCGATCAAGAGCCTGAAGCTGTTGTTGTTAGATCTCCATACATGAAGCGGAAGAGTATAGTGAATGAAAACAATGCAGAGTCCCAGGAGTGGAGTAACAGCCCTGCTATCAATGTGACAAATAGTCCCTTCAAAACTCCTGTGTCTGCAAAAGGAGGAAGGACATTCAATAAGTCAAAGGTTGCCAAGGAAGGAAGATCTGGTCCTCAGACTCCCACCTCGAATGCTGGTTCCCCTTCTCTAACACCTGCTGGCAGCTGTCGTTATGACAGTTCCTTGGGTCTGTTGACTAAAAAGTTCATCAATTTGCTCAAGCATGCAGAGGATGGTGACCTTGATCTAAATAAAGCAGCAGAAACTTTGGAGGTGCAAAAGAGGAGGATATATGACATAACTAATGTTTTGGAAGGGATTGGTCTCATTGAGAAAAAGCTCAAAAATAGAATACATTGGAAGGGAATTGACTCTTCTACATCAGGAGAGGTGGATGGTGATGTATCTATGCTAAAGGCAGATGTTGAGAAGCTTTCATTGGAAGAGCAAAGATTAGATGATCAAATAAGGGTAATGCAGGAAAGGCTGAGGAATTTGAGCGAAGATGAAAGAAACCAGAAGTGGCTTTTTGTAACTGAAGAAGATATCAAGGGCCTACCCAGCTTGCAGAATGAAACTCTAATAGCGATTAAAGCCCCGCATGGAACCACCTTGGAAGTCCCTGATCCTGAGGAGGCTGTTGACTATCCACAGAGGAGATATAGAATAATTCTGAGAAGCACAATGGGTCCCATTGATGTCTACCTTGTCAGTCAATTTGAGGAGAAATTTGAAGAGATGAATGGCATTGAGCCCCCCGTGAGCTTCCCAATTGCTTCAAGTTCAGGGTCCATTGAACACCTTTCAACAGAAATGGCTCCTGTTGACAGCAATGGAAAGGGACTTGACTCTCAAACTCAACTCTCTTCTCATACATGCTCTGATCTAAATGCCTCACCAGAATTTGGTGGGGGCATTATGAAAATTGTTCCTTCTGATGTTGATAATGATGCAGATTATTGGCTTCTATCAGATGCTGACGTTAGCATTACAGATATGTGGAGAACAGATTCTAGTGTTGATTGGAATGGGGTGGACATGCTCCCTCCTGACTTTGGAATCATCTCAAGGCCTCAAACTCCGTCATCGGGCTTTACTGATGGACCTTCCACATTAGCTAACTCTACTCAGAGTTTATACTTGGAGGATGTAGCTTTTAAGGTAGATTGGTTGCTTTAG 1443 0.4498 MSGGVGASNHQASPPLEASNVQNRPPQKLHLAFASTKPPFVSPDDYHSFSASDSRRAADQEPEAVVVRSPYMKRKSIVNENNAESQEWSNSPAINVTNSPFKTPVSAKGGRTFNKSKVAKEGRSGPQTPTSNAGSPSLTPAGSCRYDSSLGLLTKKFINLLKHAEDGDLDLNKAAETLEVQKRRIYDITNVLEGIGLIEKKLKNRIHWKGIDSSTSGEVDGDVSMLKADVEKLSLEEQRLDDQIRVMQERLRNLSEDERNQKWLFVTEEDIKGLPSLQNETLIAIKAPHGTTLEVPDPEEAVDYPQRRYRIILRSTMGPIDVYLVSQFEEKFEEMNGIEPPVSFPIASSSGSIEHLSTEMAPVDSNGKGLDSQTQLSSHTCSDLNASPEFGGGIMKIVPSDVDNDADYWLLSDADVSITDMWRTDSSVDWNGVDMLPPDFGIISRPQTPSSGFTDGPSTLANSTQSLYLEDVAFKVDWLL 480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere02g1234 480 Pfam E2F transcription factor CC-MB domain 226 326 IPR032198 GO:0046983
Dere02g1234 480 Gene3D - 139 212 IPR036388 -
Dere02g1234 480 SMART E2F_TDP_2 145 210 IPR003316 GO:0005667|GO:0006355
Dere02g1234 480 MobiDBLite consensus disorder prediction 75 105 - -
Dere02g1234 480 Pfam E2F/DP family winged-helix DNA-binding domain 147 210 IPR003316 GO:0005667|GO:0006355
Dere02g1234 480 SUPERFAMILY E2F-DP heterodimerization region 223 327 IPR037241 -
Dere02g1234 480 MobiDBLite consensus disorder prediction 1 26 - -
Dere02g1234 480 Coils Coil 223 257 - -
Dere02g1234 480 PANTHER TRANSCRIPTION FACTOR E2F 81 427 IPR015633 GO:0000978|GO:0006357
Dere02g1234 480 FunFam E2F transcription factor 1 139 212 - -
Dere02g1234 480 Gene3D - 217 327 - -
Dere02g1234 480 MobiDBLite consensus disorder prediction 1 141 - -
Dere02g1234 480 SUPERFAMILY "Winged helix" DNA-binding domain 145 208 IPR036390 -
Dere02g1234 480 MobiDBLite consensus disorder prediction 121 141 - -
Dere02g1234 480 CDD E2F_DD 226 327 IPR032198 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere02g1234 Dere-ChrDere02 11820312 11825305 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere02g1234 25 444 E2F-DP Transcription Factor Family AT2G36010 59.645 1.89e-165 474
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF E2F-DP Dere02g1234 E2F_CC-MB 6.2e-34 No_clan