Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere02g1221 ATGGGACGCGTCCGCACCAAGACAGTCAAGAAGTCTTCACGCCAAGTCATTGAGAGGTACTACTCTCGAATGACCTTGGATTTCCACACCAACAAGAAGATTCTTGAGGAGGTTGCACTAATTCCCTCCAAGAGACTCCGCAACAAAATTGCCGGATTCTCCACTCATCTGATGAAGAGGATCCAGAAGGGTCCTGTTCGTGGAATTTCCCTCAAGCTTCAGGAGGAGGAGCGTGAGCGTCGCATGGACTTCGTGCCTGACGTCTCCGCCATTAAGACTGACCAGATCGAGGTCGATAAGGAGACTCTAGACATGCTCAATGCTCTTGGTATGAATGATATTCCAGGGCTTCACCAAGTTGATCCCGTCCCTGTGCCGCAGCAGCTGGGATTCGGCCGAGGTGGTTTTGGTGGAGCTAGGAGGTATTAG 429 0.5152 MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVALIPSKRLRNKIAGFSTHLMKRIQKGPVRGISLKLQEEERERRMDFVPDVSAIKTDQIEVDKETLDMLNALGMNDIPGLHQVDPVPVPQQLGFGRGGFGGARRY 142
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere02g1221 142 Pfam Ribosomal S17 1 120 IPR001210 GO:0003735|GO:0005840|GO:0006412
Dere02g1221 142 FunFam 40S ribosomal protein S17 1 62 - -
Dere02g1221 142 Hamap 30S ribosomal protein S17e [rps17e]. 1 63 IPR001210 GO:0003735|GO:0005840|GO:0006412
Dere02g1221 142 ProSitePatterns Ribosomal protein S17e signature. 41 56 IPR018273 GO:0003735|GO:0005840|GO:0006412
Dere02g1221 142 SUPERFAMILY Rps17e-like 1 62 IPR036401 GO:0003735|GO:0005840|GO:0006412
Dere02g1221 142 PANTHER 40S RIBOSOMAL PROTEIN S17 1 124 IPR001210 GO:0003735|GO:0005840|GO:0006412
Dere02g1221 142 Gene3D - 1 62 IPR036401 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere02g1221 Dere-ChrDere02 11735446 11735874 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere02g1221 1 140 Cytoplasmic Ribosomal Protein Gene Family AT5G04800 81.429 1.76e-78 227