Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere02g1214 ATGTCCATAAATCACTACTCATCGGACATTCCAGACAGCACACTGTGGTTGACCGAGCAACATCATCAAGGCATCCTAATGGAGGCCTTACAAAACCCCTCCCCATCTTGGCCTTATTCCCATCTCTACCAACCCACTGATCCCCGACCCCGCTTCAACCTCAACCACGACGACGAAGAAGACGACGATGACGACAGTATTCAACAGCGGACCACCCACGTGGATAACGATATTCCCACCTCACAAGGCACAGGCGAAGACGAAAAGGAAGGGATGTTCGAGAAGCCATTGACGCCGAGTGACGTGGGGAAGCTGAACCGACTGGTGATCCCGAAGCAGCACGCGGAGAAGTACTTCCCACTGGGGGCGGGAGGCGAGTCGGGGGAGAGCAAAGGGGTTTCACTGAGTTTCGAGGACGAGTCAGGCAAGTGCTGGAGGTTCCGTTACTCCTATTGGAATAGCAGCCAGAGCTATGTTTTGACCAAAGGCTGGAGTCGTTACGTCAAGGACAAGCGCCTCGATGCTGGCGACGTCGTATTCTTCCAGCGCCACCGCACCGACTCCAACCGCCTCTTCATCAACTGGAGGCGCCGCCACCAGACAGAGTCCACCCCCGCCCACGTTAACAGAGCGGTGCTGGTTCACAACACTACTGTTACTACTACTCCTCCCACTGACGCCAATAGCAATATGAATATCAATAATAACAATGTTGGTGTGAGAGTGGGGTGGACCAGAGGTTTCTATCCTACGCATCCTTATCCTGCGCATCATCATCAGCCCTTGTCATACCAACCTGACCGTCTTCATGCAGGTGTAGCGCCGGGAGCTGATCGGAGCCAAACGACGTCGCCGGTGGGAAAAAGCTCCAGCTCGAGAGTACTAAGGCTGTTCGGTGTAAACATGGAATGCCAACCCGATGAATCCGGATCCTCCAGACCCGAATGCTCCTACATGTCATCAACCCAGAGTACAGCTGCCCAGCATCACCACTTCTACGGCCATTATTATCATTAA 1017 0.5379 MSINHYSSDIPDSTLWLTEQHHQGILMEALQNPSPSWPYSHLYQPTDPRPRFNLNHDDEEDDDDDSIQQRTTHVDNDIPTSQGTGEDEKEGMFEKPLTPSDVGKLNRLVIPKQHAEKYFPLGAGGESGESKGVSLSFEDESGKCWRFRYSYWNSSQSYVLTKGWSRYVKDKRLDAGDVVFFQRHRTDSNRLFINWRRRHQTESTPAHVNRAVLVHNTTVTTTPPTDANSNMNINNNNVGVRVGWTRGFYPTHPYPAHHHQPLSYQPDRLHAGVAPGADRSQTTSPVGKSSSSRVLRLFGVNMECQPDESGSSRPECSYMSSTQSTAAQHHHFYGHYYH 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere02g1214 338 FunFam B3 domain-containing protein 86 208 - -
Dere02g1214 338 SMART B3_2 93 199 IPR003340 GO:0003677
Dere02g1214 338 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 75 313 IPR044800 GO:0003700
Dere02g1214 338 Pfam B3 DNA binding domain 93 198 IPR003340 GO:0003677
Dere02g1214 338 MobiDBLite consensus disorder prediction 268 292 - -
Dere02g1214 338 MobiDBLite consensus disorder prediction 37 98 - -
Dere02g1214 338 ProSiteProfiles B3 DNA-binding domain profile. 93 199 IPR003340 GO:0003677
Dere02g1214 338 MobiDBLite consensus disorder prediction 277 292 - -
Dere02g1214 338 SUPERFAMILY DNA-binding pseudobarrel domain 92 201 IPR015300 -
Dere02g1214 338 CDD B3_DNA 92 189 IPR003340 GO:0003677
Dere02g1214 338 Gene3D - 87 209 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere02g1214 Dere-ChrDere02 11659949 11661494 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere02g1214 86 308 RAV Transcription Factor Family AT5G06250 52.586 1.57e-68 214
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Dere02g1214 B3 4.2e-30 CL0405
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere01g2652 01 41376878 41378176 Dere02g1214 02 11659949 11661494 CCT
Dere02g1214 02 11659949 11661494 Dere02g1214 02 11659949 11661494 ECH