Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere02g1203 ATGCAGATTTTCGTGAAAACCCTCACAGGGAAGACCATAACTCTCGAGGTCGAGAGCAGTGACAGTATCGACAATGTCAAGGCTAAGATTCAAGACAAGGAAGGTATCCCACCGGATCAGCAGCGTTTGATTTTTGCTGGCAAGCAGCTCGAAGATGGCAGAACTTTAGCTGATTACAACATTCAAAAGGAGTCCACGCTTCATCTTGTACTGAGACTTCGTGGCGGTATCATAGAGCCTTCTTTGATGGCTTTGGCTCGCAAGTACAACCAAGACAAGATGATCTGCCGCAAGTACGTGTCTTTTCTGTTTGTTAATGCCCTATAG 327 0.4587 MQIFVKTLTGKTITLEVESSDSIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGIIEPSLMALARKYNQDKMICRKYVSFLFVNAL 108
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere02g1203 108 FunFam Ubiquitin-60S ribosomal L40 fusion 1 78 - -
Dere02g1203 108 Pfam Ubiquitin family 3 74 IPR000626 GO:0005515
Dere02g1203 108 ProSitePatterns Ubiquitin domain signature. 27 52 IPR019954 -
Dere02g1203 108 PRINTS Ubiquitin signature 53 74 IPR019956 -
Dere02g1203 108 PRINTS Ubiquitin signature 11 31 IPR019956 -
Dere02g1203 108 PRINTS Ubiquitin signature 32 52 IPR019956 -
Dere02g1203 108 SMART ubq_7 1 72 IPR000626 GO:0005515
Dere02g1203 108 Gene3D - 79 108 IPR038587 -
Dere02g1203 108 Gene3D - 1 78 - -
Dere02g1203 108 SUPERFAMILY Ubiquitin-like 1 76 IPR029071 -
Dere02g1203 108 CDD Ubl_ubiquitin 1 76 - -
Dere02g1203 108 PANTHER UBIQUITIN 1 87 - -
Dere02g1203 108 FunFam Predicted protein 78 98 - -
Dere02g1203 108 ProSiteProfiles Ubiquitin domain profile. 1 76 IPR000626 GO:0005515
Dere02g1203 108 Pfam Ribosomal L40e family 78 102 IPR001975 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere02g1203 Dere-ChrDere02 11526004 11526620 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere02g1203 1 108 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 90.741 1.41e-68 200