Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Dere02g1190 | ATGAAGCCCAACTCCAATCCTCATCGTCATCGGCATCACTGTCATAGGCACACTTCTTTGAGGATTGTGGCTTCAAGCAATTCCCCATTCCCAAACCCAGAGTCATCAGTGGAGCATTGTGACCTTGAAAAGCCTAGAGATTCTGAAGAGAAGGTAGACTTTGACGGGGATAATGATCAAGGGGATACCATGGAGGAAGACTTTGAATATGAAGAAGTAGAGGAGGAGGAAGAGGAGGAGCAGGAGCAGCAGGAGGTTGAGGAAGATACTAAAGGGGCTGCCAGTGGAGATGTTGCAGACACTGAGGATGATGATGCGAAAAAGAAGCATGCAGAGCTTCTTGCATTTCCACCTCATGGTTCAGAGGTTTACCTTGGTGGCATTCCTCACAATGCTTCCGAAGAGGATTTAAAAACCTTTTGTCAATCTGTTGGAGATGTCTTTGAGGTTAGGATTATGAAGGGAAAGGAATCTAGTGAAGCTAAATGTTATGCCTTTGTCACCTTCATGACAAAGGAGATGGCTTCCAAGGCTATTGAGAAGCTGAACAAATCTAAATTTCAGGGAAATAAAATAAAATGCTCAAAATCTCAAGCAAAGCATAAGTTATTTATTGGAAATGTTCCTAGAAATTGGACAGAGGAAGATTTGAGGAACGCTGTTACAGACATTGGGCCTGGAGTCAATTCTGTTGAATTGTTGAAGGAATCACAGAATTCAGCCCGTAATCGTGGATTTGCTTTTATTGAGTATTACAATCATGCGTGTGCAGAATATTCAAGGCAGAAGATGTCAAACCCAAAATTTAAACTTGACATTAATGCTCCAACAGTGAGCTGGGCTGACCCAAAGAATGCTGAATCATCTGCAGCCTCCCAGGTGAAGGCAGTGTATGTAAAGAATCTGCCAGAAAATATTACTCAGGATCGTCTTAGAGAGTTGTTTAAACATCATGGAAAGATCACCAAAGTGGTACCCCCTCTTGCAAAAGCAGGACATGAGATGAGCAGATTTGGTTTTGTTCACTTTGCCGAGAGGTCATGCGCGATGAAGGCATTGAAGAATACTGAGAAGAATGAAATTGATGGCCAAGTTTTGGAATGTTCACTTGCAAAGCCACAAGCAGACCAGAAGTCATCCGGGACTCCAATATCACAGAACTCAGTTGTACTCCCAGGTTATCCACCTCGTCTTAGTTATGGTATGGTTGGAGGTGCTATAGGTGCAGGATATGGTGCAGCTAGCTTTACACAACCACTTGTCTATGGTGGGGGAGCAGCTCCTGCTGACATGGCGATGATGCCAATGCTTTTACCAGATGGAAGAATTGGATATGTATTGCAACAGCCAGGTCGCAAGATCACCGTTCACCAACATCCCGAGTTGGCAGGAGTGGTGGTAGCTCGAGAGATGGGAAACGCATTAATGATAAGAACCGTGGCCGATATCATCCGTACTAATGTAATTGGCTTACCTTGGGACGTTAGAAATCAGAGGTTCCCCAATTCGAGAATTTCAGCGTGGTGA | 1527 | 0.4407 | MKPNSNPHRHRHHCHRHTSLRIVASSNSPFPNPESSVEHCDLEKPRDSEEKVDFDGDNDQGDTMEEDFEYEEVEEEEEEEQEQQEVEEDTKGAASGDVADTEDDDAKKKHAELLAFPPHGSEVYLGGIPHNASEEDLKTFCQSVGDVFEVRIMKGKESSEAKCYAFVTFMTKEMASKAIEKLNKSKFQGNKIKCSKSQAKHKLFIGNVPRNWTEEDLRNAVTDIGPGVNSVELLKESQNSARNRGFAFIEYYNHACAEYSRQKMSNPKFKLDINAPTVSWADPKNAESSAASQVKAVYVKNLPENITQDRLRELFKHHGKITKVVPPLAKAGHEMSRFGFVHFAERSCAMKALKNTEKNEIDGQVLECSLAKPQADQKSSGTPISQNSVVLPGYPPRLSYGMVGGAIGAGYGAASFTQPLVYGGGAAPADMAMMPMLLPDGRIGYVLQQPGRKITVHQHPELAGVVVAREMGNALMIRTVADIIRTNVIGLPWDVRNQRFPNSRISAW | 508 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Dere02g1190 | 508 | CDD | RRM_SF | 123 | 195 | - | - | |
| Dere02g1190 | 508 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 295 | 373 | IPR000504 | GO:0003723 | |
| Dere02g1190 | 508 | MobiDBLite | consensus disorder prediction | 1 | 106 | - | - | |
| Dere02g1190 | 508 | Gene3D | - | 202 | 282 | IPR012677 | - | |
| Dere02g1190 | 508 | PANTHER | HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN | 43 | 379 | - | - | |
| Dere02g1190 | 508 | MobiDBLite | consensus disorder prediction | 37 | 53 | - | - | |
| Dere02g1190 | 508 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 123 | 193 | IPR000504 | GO:0003723 | |
| Dere02g1190 | 508 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 297 | 366 | IPR000504 | GO:0003723 | |
| Dere02g1190 | 508 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 203 | 269 | IPR000504 | GO:0003723 | |
| Dere02g1190 | 508 | SUPERFAMILY | RNA-binding domain, RBD | 285 | 383 | IPR035979 | GO:0003676 | |
| Dere02g1190 | 508 | Gene3D | - | 43 | 201 | IPR012677 | - | |
| Dere02g1190 | 508 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 201 | 283 | IPR000504 | GO:0003723 | |
| Dere02g1190 | 508 | MobiDBLite | consensus disorder prediction | 1 | 19 | - | - | |
| Dere02g1190 | 508 | MobiDBLite | consensus disorder prediction | 87 | 106 | - | - | |
| Dere02g1190 | 508 | SUPERFAMILY | RNA-binding domain, RBD | 118 | 268 | IPR035979 | GO:0003676 | |
| Dere02g1190 | 508 | Gene3D | - | 283 | 389 | IPR012677 | - | |
| Dere02g1190 | 508 | Coils | Coil | 70 | 90 | - | - | |
| Dere02g1190 | 508 | MobiDBLite | consensus disorder prediction | 54 | 86 | - | - | |
| Dere02g1190 | 508 | MobiDBLite | consensus disorder prediction | 20 | 34 | - | - | |
| Dere02g1190 | 508 | FunFam | RNA-binding (RRM/RBD/RNP motifs) family protein | 202 | 282 | - | - | |
| Dere02g1190 | 508 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 121 | 199 | IPR000504 | GO:0003723 | |
| Dere02g1190 | 508 | SMART | rrm1_1 | 296 | 369 | IPR000504 | GO:0003723 | |
| Dere02g1190 | 508 | SMART | rrm1_1 | 202 | 279 | IPR000504 | GO:0003723 | |
| Dere02g1190 | 508 | SMART | rrm1_1 | 122 | 195 | IPR000504 | GO:0003723 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Dere02g1190 | Dere-ChrDere02 | 11388791 | 11396700 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Dere02g1190 | 128 | 437 | Eukaryotic Initiation Factors Gene Family | AT4G34110 | 25.414 | 7.10e-14 | 72.4 |