Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere02g1175 ATGGAGAACTTCGATGAAGGTTTTGAACTGAAGGAGATTCAGACACTTGAAGGTCACTCCGATAGGGTTTGGAGCCTGGCTTGGAATCCTGCTTCTGGGCATTCTGGAATTCCATCTGTCTTCGCCTCTTGTAGCGGCGATAAAACCGTTCGAATCTGGGAGCAGAATCTCTCTTCTGGTCTTTGGAACTGCAAGGCAGTTTTGGAAGAAACACACACTAGAACTGTTCGATCATGTGCGTGGTCACCATCTGGGAAACTGTTGGCTACTGCGAGCTTTGATGCCACTACTGCCATCTGGGAAAATGTTGGGGGTGATTTTGAGTGCGTCTCTACTCTGGAGGGTCATGAAAATGAAGTGAAGAGTGTGTCTTGGAATGCATCTGGATCTCTGCTTGCAACATGTGGTAGAGATAAATCTGTTTGGATATGGGAAGTGCAGCCAGGTAATGAGTTTGAGTGTGTCTCAGTGCTGCAAGGACATACACAAGATGTGAAGATGGTGCAGTGGCATCCGACAATGGATATATTAATTTCATGTAGCTACGATAACAATGTTAAGGTTTGGGCAGATGAAGGCGACAGTGATGACTGGCAGTGTGTCCAGACTTTAGGAGAACCTAATAATGGTCATACTTCTACTGTTTGGGCCCTCTCCTTTAATGCTAGTGGAGATAAAATGGTTACCTGTAGTGATGATCTTACCTTGAAGGTATGGGAAACAGATAACATAAGGATGCAATCTGGAAATGAATTTGCACCTTGGAGACATCTTTGCACTCTTACAGGGTATCATGATCGGACAATTTTCTCTGTTCATTGGTCAAGAGAAGGTATCATTGCCAGTGGAGCAGCTGATGATGGTATACGGCTTTTTGTGGAGAATAATGATTGCCTGGTTGATGGCCCCCAGTACAAATTGCTGCTGAAAAAGGAGAAGGCCCATGACATGGATGTAAATTCAGTGCAATGGAGCCCTGGGGAGAAGCGGCTGCTAGCCTCTGCAAGCGATGATGGGACTATCAAGGTGTGGGAGCTGGTATCACTTTTAGCCAAGGGTTGGTTTAATATTTGGTTGCAAAATTACTTCCCAACTGTGATAAACATGTTATCTTCAACAAGCCCTATGTATGGGATCACAATTCACAAGGAAGGGTTATCAATGAATGGTAGGTTGCTGTGA 1182 0.4475 MENFDEGFELKEIQTLEGHSDRVWSLAWNPASGHSGIPSVFASCSGDKTVRIWEQNLSSGLWNCKAVLEETHTRTVRSCAWSPSGKLLATASFDATTAIWENVGGDFECVSTLEGHENEVKSVSWNASGSLLATCGRDKSVWIWEVQPGNEFECVSVLQGHTQDVKMVQWHPTMDILISCSYDNNVKVWADEGDSDDWQCVQTLGEPNNGHTSTVWALSFNASGDKMVTCSDDLTLKVWETDNIRMQSGNEFAPWRHLCTLTGYHDRTIFSVHWSREGIIASGAADDGIRLFVENNDCLVDGPQYKLLLKKEKAHDMDVNSVQWSPGEKRLLASASDDGTIKVWELVSLLAKGWFNIWLQNYFPTVINMLSSTSPMYGITIHKEGLSMNGRLL 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere02g1175 393 PRINTS G protein beta WD-40 repeat signature 227 241 IPR020472 -
Dere02g1175 393 PRINTS G protein beta WD-40 repeat signature 332 346 IPR020472 -
Dere02g1175 393 PRINTS G protein beta WD-40 repeat signature 41 55 IPR020472 -
Dere02g1175 393 ProSiteProfiles Trp-Asp (WD) repeats profile. 113 154 IPR001680 GO:0005515
Dere02g1175 393 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 158 189 - -
Dere02g1175 393 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 69 101 - -
Dere02g1175 393 ProSitePatterns Trp-Asp (WD) repeats signature. 227 241 IPR019775 -
Dere02g1175 393 ProSitePatterns Trp-Asp (WD) repeats signature. 132 146 IPR019775 -
Dere02g1175 393 ProSiteProfiles Trp-Asp (WD) repeats profile. 208 243 IPR001680 GO:0005515
Dere02g1175 393 ProSitePatterns Trp-Asp (WD) repeats signature. 332 346 IPR019775 -
Dere02g1175 393 ProSiteProfiles Trp-Asp (WD) repeats profile. 312 346 IPR001680 GO:0005515
Dere02g1175 393 CDD WD40 12 345 - -
Dere02g1175 393 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 208 243 - -
Dere02g1175 393 ProSiteProfiles Trp-Asp (WD) repeats profile. 158 189 IPR001680 GO:0005515
Dere02g1175 393 ProSiteProfiles Trp-Asp (WD) repeats profile. 69 101 IPR001680 GO:0005515
Dere02g1175 393 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 312 346 - -
Dere02g1175 393 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 113 147 - -
Dere02g1175 393 Hamap Probable cytosolic iron-sulfur protein assembly protein CIAO1 [CIAO1]. 8 348 IPR028608 GO:0016226|GO:0097361
Dere02g1175 393 Gene3D - 34 351 IPR015943 GO:0005515
Dere02g1175 393 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 16 54 - -
Dere02g1175 393 SUPERFAMILY WD40 repeat-like 9 344 IPR036322 GO:0005515
Dere02g1175 393 PANTHER WD40 PROTEIN CIAO1 10 347 IPR028608 GO:0016226|GO:0097361
Dere02g1175 393 Pfam WD domain, G-beta repeat 153 189 IPR001680 GO:0005515
Dere02g1175 393 Pfam WD domain, G-beta repeat 198 239 IPR001680 GO:0005515
Dere02g1175 393 Pfam WD domain, G-beta repeat 108 144 IPR001680 GO:0005515
Dere02g1175 393 Pfam WD domain, G-beta repeat 11 53 IPR001680 GO:0005515
Dere02g1175 393 Pfam WD domain, G-beta repeat 63 100 IPR001680 GO:0005515
Dere02g1175 393 Pfam WD domain, G-beta repeat 313 344 IPR001680 GO:0005515
Dere02g1175 393 FunFam Probable cytosolic iron-sulfur protein assembly protein CIAO1 8 349 - -
Dere02g1175 393 ProSiteProfiles Trp-Asp (WD) repeats profile. 16 54 IPR001680 GO:0005515
Dere02g1175 393 SMART WD40_4 197 240 IPR001680 GO:0005515
Dere02g1175 393 SMART WD40_4 61 101 IPR001680 GO:0005515
Dere02g1175 393 SMART WD40_4 106 145 IPR001680 GO:0005515
Dere02g1175 393 SMART WD40_4 9 54 IPR001680 GO:0005515
Dere02g1175 393 SMART WD40_4 304 345 IPR001680 GO:0005515
Dere02g1175 393 SMART WD40_4 254 293 IPR001680 GO:0005515
Dere02g1175 393 SMART WD40_4 151 190 IPR001680 GO:0005515
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere02g1175 84 352 U-box Gene Family AT2G33340 25.926 9.66e-15 73.9