Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere02g1147 ATGGACTTGTATCTGAAGCAATGGAGAAACCAGCATGAGTCAGAGGCAGAGGAACAACATTCTGCAAAGATGCCAAAACTTGTGCTCCAACCTCATCAAAAGCCACAATCATCTGCCTCTGCTCTCCCTTTGTTTGTACCCGAACCCAACACTAAAGTCAGCACCTTGTCAGCATTATCTGATTCAACATTAGCTCCTGCTAGAGTTCCCCGGATGGGAAGTTTCTTCAGCTTGGCTCAGCGGCAGGAACTGGAGTTGCAGGCTTTGATTTTTAGGTATATGTTAGCCGGTGCTGCTGTTCCTCCAGAGCTTCTTCACCCAATCAAGAAAAGCCTTCTCCAATCCTCTCCCTATATCCTCCAGCATTACCCACATTATGACCCAGCTTTGGCATTACAATCGGGGTATTGGGGAAGAGCAGCCATGGATCCAGAGCCCGGCCGGTGCAGGAGGACCGACGGCAAAAAGTGGCGGTGCTCGAGGGATGTGGTGGCCGGCCAGAAGTACTGCGAGCGCCACATGCATCGCGGTCGAAACCGTTCAAGAAAGCCCGTGGAACTACCCACACCACCCGTAGCCGGTGGCGATGGCTCCGGCGGTGGTGGTAGTGGAGGCCCTCTCGGTGCTACAACCTTCATTACTGCGCCGTCATTGGCAACGGGTTCCATGAATTCCCCTTTCGATCTCCTTCATCTCGATCAAAGTTCCTCTGGGACCAAGAATGAAAACAACAGGCTGTTTGGAATCCAAGATGATGTGGGTGGGGATGGCAGATCCGATGGCCATATCCGGCGGCGTTTTTTCGTTGATTGGCCAAGATCACTTTAA 828 0.5217 MDLYLKQWRNQHESEAEEQHSAKMPKLVLQPHQKPQSSASALPLFVPEPNTKVSTLSALSDSTLAPARVPRMGSFFSLAQRQELELQALIFRYMLAGAAVPPELLHPIKKSLLQSSPYILQHYPHYDPALALQSGYWGRAAMDPEPGRCRRTDGKKWRCSRDVVAGQKYCERHMHRGRNRSRKPVELPTPPVAGGDGSGGGGSGGPLGATTFITAPSLATGSMNSPFDLLHLDQSSSGTKNENNRLFGIQDDVGGDGRSDGHIRRRFFVDWPRSL 275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere02g1147 275 Pfam QLQ 76 108 IPR014978 GO:0005524|GO:0005634|GO:0006355
Dere02g1147 275 SMART QLQ_2 74 110 IPR014978 GO:0005524|GO:0005634|GO:0006355
Dere02g1147 275 MobiDBLite consensus disorder prediction 172 207 - -
Dere02g1147 275 ProSiteProfiles QLQ domain profile. 75 110 IPR014978 GO:0005524|GO:0005634|GO:0006355
Dere02g1147 275 PANTHER GROWTH-REGULATING FACTOR 5 31 271 IPR031137 GO:0005634|GO:0006351|GO:0032502
Dere02g1147 275 ProSiteProfiles WRC domain profile. 143 187 IPR014977 -
Dere02g1147 275 Pfam WRC 144 186 IPR014977 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere02g1147 Dere-ChrDere02 10980709 10982561 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere02g1147 1 273 GRF Transcription Factor Family AT3G52910 50.336 2.56e-73 227
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRF Dere02g1147 WRC 1.5e-22 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere01g2727 01 42083242 42085329 Dere02g1147 02 10980709 10982561 CCT
Dere02g1147 02 10980709 10982561 Dere02g1147 02 10980709 10982561 ECH