Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere02g1141 ATGGACGAGTCATCAGCTGTGGCTTCACGTTGTGATGTTGTGGGTAGCAGCGCATATCGATATCCCTATTCCTACCTAATTGTCTGCAGAAACACGGTCTCCAACTCCAACCCAGGTATCCAACACCAGATAAGCTGGCTTACAACCCAACTCTTGGCACACGGCAGTTCAGCAACAACTGGTTTGCACTTCCACTCCATCTCGCAACTGCTTCTCCTCACTCCCATAAATGGGTTCCTCCAACTGTCAACTGCCACCAAGAACCATTCCAACGATCTTACGATGCGTAACTGTGGCAGCAGCAGCAGCAAAGCCTCAACTGGGCGTCACCCTGTGTACAGAGGAGTGAGGCGTAGGAGCAGCGGCAAATGGGTGTCTGAAATTCGAGAGCCCAAGAAGCCAAACAGGATTTGGTTAGGCACATTCCCTACCCCTGAAATGGCTGCCGTCGCCTATGACGTGGCTGCCCTTGCTCTTAAAGGTAAGCATGCCGAGCTCAACTTCCCTAACTCCGCTTCTTCCTTGCCAGTCCCTGCTTCTTCCTCTCCCTCTGATATTCAGATGGCGGCGGCTAGCGCCGCTGCTGCCGTCGGGGCTGCCAAGGATGCCTTGTCTGCTGCGAATGGGGATATTGCTTCTTCTGCAGTGTCAGTACAAGACAAGGATGGAGGAGTGCAGGAGGAATTTGTGGATGAGGATTTGATCTTCGATATGCCAAATGTGCTGCTCAATATGGCCGAAGGAATGATGCTCACCCCTCCTCCTTTCAACTGGGAAGCTGGTGCTCCCCCAGAATACATGCCTCAAGATTCATGCCTCTGGAACTTCCCTAATTAA 837 0.5221 MDESSAVASRCDVVGSSAYRYPYSYLIVCRNTVSNSNPGIQHQISWLTTQLLAHGSSATTGLHFHSISQLLLLTPINGFLQLSTATKNHSNDLTMRNCGSSSSKASTGRHPVYRGVRRRSSGKWVSEIREPKKPNRIWLGTFPTPEMAAVAYDVAALALKGKHAELNFPNSASSLPVPASSSPSDIQMAAASAAAAVGAAKDALSAANGDIASSAVSVQDKDGGVQEEFVDEDLIFDMPNVLLNMAEGMMLTPPPFNWEAGAPPEYMPQDSCLWNFPN 278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere02g1141 278 MobiDBLite consensus disorder prediction 93 108 - -
Dere02g1141 278 SUPERFAMILY DNA-binding domain 112 171 IPR016177 GO:0003677
Dere02g1141 278 PRINTS Ethylene responsive element binding protein signature 113 124 IPR001471 GO:0003700|GO:0006355
Dere02g1141 278 PRINTS Ethylene responsive element binding protein signature 151 171 IPR001471 GO:0003700|GO:0006355
Dere02g1141 278 MobiDBLite consensus disorder prediction 93 112 - -
Dere02g1141 278 ProSiteProfiles AP2/ERF domain profile. 112 169 IPR001471 GO:0003700|GO:0006355
Dere02g1141 278 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 101 275 IPR045277 GO:0003700
Dere02g1141 278 Pfam AP2 domain 111 161 IPR001471 GO:0003700|GO:0006355
Dere02g1141 278 Gene3D AP2/ERF domain 112 170 IPR036955 GO:0003700|GO:0006355
Dere02g1141 278 FunFam Ethylene-responsive transcription factor 2 111 170 - -
Dere02g1141 278 CDD AP2 113 171 IPR001471 GO:0003700|GO:0006355
Dere02g1141 278 SMART rav1_2 112 175 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere02g1141 Dere-ChrDere02 10894222 10895372 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere02g1141 102 277 AP2-EREBP Transcription Factor Family AT2G36450 64.088 1.73e-60 188
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Dere02g1141 AP2 4.2e-12 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere01g2733 01 42135426 42136007 Dere02g1141 02 10894222 10895372 CCT
Dere02g1141 02 10894222 10895372 Dere02g1141 02 10894222 10895372 ECH