Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere02g1139 ATGGAAATGGAGGATCATCATCAGCATCAGCATCTCGAGTACGGTAGTATGGGGGATCTCAGGCAGCTCATGAACGCACCAAGGTCCACCCATTTCCCTTCAATCTCTGCGGACCTCTTCCCGGGTCACCCGAATTTCACACCCACCCACCACATGATGGCCTTTGGAAATGGTCGTGGCCTTCACGATTCTGCTGCTCTTAATACTAGCATTACTGTAGCCACTCCTACCGCCGCCGCCGCTACTGCTTCCACTCCGCCGCTTAGTGGCTTAGAGGCTGACACTGCAGGATGTTTCTCCGGAGACCCCTCCACCGCACGATGGCCCAGACAGGAGACTCTTACTCTTCTTGAGATCAGATCTCGTCTTCACCCTCAGTTCAAACATGCCAATCAAAAGGGCCCCTTGTGGGATGAACTTTCTAGGATCATGTCCGAAGAATATGGATATCAAAGGAGCGGGAAAAAATGCAGGGAAAAATTCGAAAACTTGTACAAATACTACAAGAAGACAAAAGAAGGTAAGGCAGGAAGACAGGATGGGAAGCATTACAGATTCTTTCGTCAACTTGAAGCCTTATATGGAGAAAACAACCCAACCTCAGTCCCAGAAACCAATTTTGGCAGCAGCAGTCTTCATTTTCAGACCCCCTCCCAAACAAATCATGACATGTTTATTAAGCAATGCGATAGTGTCAGCCTCACTAATAACTCCGCTGAGCTGGACACATCATCATCGGATGACAACGACTCATTTGAGAAGAGGAGAAAGAGGAGAGGAAGAAGCCGGAAAGGAAAGATAAAAGAGTTAATAGACTCAGAGATGAGGAAGGTGATGGAGAAGCAAGAGGCATGGTTGGATAGATTGATGAAGACGTTGGAAGAGAAGGAAAAAGAGAGAGCTTTAAGAGAGGAAGAATGGACTAGACAAGAGGCAGCAAGGTTAGAGAGGGAGCACAAGTTTTGGGCTAAAGAGAGGGCTTGGATGGAATCCAGGGATGCTGCTCTAATGGAGGCACTGCAAAAATTAACAGGAAGAGAGATAAAGGCTGATGATCCCCCCAGTGCTGATATTCAAAATCACAGCGAAAACCAGAATGAAGATGAAAGTGAAATACTTCATAGCACTGACAGAGTCGGTGAGAGCTGGACAGAATCTGAGATCACTACTCTCGTTCAGATTAGAGCTGAGGTGGAGTCGAGGTTTGGGCAAAGTGGGTGTTCAGAAGAGGTTCTGTGGGAGGAAGTAGCTACCAAAATGGCTTGTTTTGGCTACCAAAAGGCTGCTTCCATGTGTAAAGATAAATGGGAAAATATCGGAAACCATCACAAGAAGCGCAAGCAAAATTCAACAAGTTGTTTTTTCTTATTGGAGAATAGTAATCAGTCACCCCTATATAATCATGGAAGTGGCTATTGTGATATCAACCAACAACGGCAGGATGGTACTTCGCCTTCAAATTCCAACGTTGGAAATGCACCTCCGCCTGAAAGTTGTTTTCCTTTGTTCATGTGCGAAGGAGAAAATTTGTGGGAAAATTACGGCTTAAAGCTCAATAAAGAAAACCAGAACCCTGAAAATAGTAATTCAGCTCGACAGCCAGTAATTGCCGATTTCAAAGTCACCAACCCCCTCCATCCAGGAGTGACAGGAGAGGGAGGTTCTTGTGCAGTCCAATCTTTACTTGAATTGTATGGCCACACATATTCATGTCATGCCTATACATACACACATCTTACGCTTCTGGACACTCAGTATCCGTACTTGGTAAAGAGTAAAGAAGTTTCCTTCATAAAGGGACCAAACATTGCTATTCTGGACACTTCACTCCTTTCTCTTCTCCCTCTTTCCAACCCTGCGTGCCTGTAA 1869 0.4548 MEMEDHHQHQHLEYGSMGDLRQLMNAPRSTHFPSISADLFPGHPNFTPTHHMMAFGNGRGLHDSAALNTSITVATPTAAAATASTPPLSGLEADTAGCFSGDPSTARWPRQETLTLLEIRSRLHPQFKHANQKGPLWDELSRIMSEEYGYQRSGKKCREKFENLYKYYKKTKEGKAGRQDGKHYRFFRQLEALYGENNPTSVPETNFGSSSLHFQTPSQTNHDMFIKQCDSVSLTNNSAELDTSSSDDNDSFEKRRKRRGRSRKGKIKELIDSEMRKVMEKQEAWLDRLMKTLEEKEKERALREEEWTRQEAARLEREHKFWAKERAWMESRDAALMEALQKLTGREIKADDPPSADIQNHSENQNEDESEILHSTDRVGESWTESEITTLVQIRAEVESRFGQSGCSEEVLWEEVATKMACFGYQKAASMCKDKWENIGNHHKKRKQNSTSCFFLLENSNQSPLYNHGSGYCDINQQRQDGTSPSNSNVGNAPPPESCFPLFMCEGENLWENYGLKLNKENQNPENSNSARQPVIADFKVTNPLHPGVTGEGGSCAVQSLLELYGHTYSCHAYTYTHLTLLDTQYPYLVKSKEVSFIKGPNIAILDTSLLSLLPLSNPACL 622
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere02g1139 622 Coils Coil 279 318 - -
Dere02g1139 622 PANTHER FI21293P1 82 502 - -
Dere02g1139 622 FunFam trihelix transcription factor PTL-like 108 170 - -
Dere02g1139 622 ProSiteProfiles Myb-like domain profile. 375 440 IPR001005 -
Dere02g1139 622 Pfam Myb/SANT-like DNA-binding domain 382 450 IPR044822 -
Dere02g1139 622 Pfam Myb/SANT-like DNA-binding domain 107 193 IPR044822 -
Dere02g1139 622 MobiDBLite consensus disorder prediction 349 379 - -
Dere02g1139 622 CDD GT1 383 447 - -
Dere02g1139 622 MobiDBLite consensus disorder prediction 237 265 - -
Dere02g1139 622 FunFam Trihelix transcription factor GT-2 383 445 - -
Dere02g1139 622 Gene3D - 108 170 - -
Dere02g1139 622 Gene3D - 383 445 - -
Dere02g1139 622 ProSiteProfiles Myb-like domain profile. 100 165 IPR001005 -
Dere02g1139 622 CDD GT1 107 172 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere02g1139 Dere-ChrDere02 10881978 10886096 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere02g1139 8 521 Trihelix Transcription Factor Family AT5G03680 44.613 3.14e-134 404
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Dere02g1139 Myb_DNA-bind_4 6e-18 CL0123