Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere02g1134 ATGGACATGGAGAATTCCCGTAGATCGTTTGATCGAATGAGAGAGCCAGGTATGAAAAAACCCCGATTGACTGACGACCTCGAGCGCGTCCCAAATCAAAGTGTTCGACCATTTCCTCAGCGACAAGTGGCTACGGCGGTTAATACGTTGGCTTCGGCAAGGTTTAGAACAAACGACAGAGATTCAGGAAGCAGTGAGTCGGGTCGCGGTCCCCAGCAACTGCTGCACCAGGAGCTTGTTACTCAGTACAAGACAGCGCTTGCTGAGCTGACTTTTAATTCAAAACCGATAATTACGAACTTGACTATAATTGCTGACGAGAATATCTATGCGGCGAAGGCAATTGCCGCGACTGTTTGTTCTAACATTCTAGAGGTTCCTAGTGAGCAAAAGCTGCCATCACTTTATCTTTTGGACAGCATAGTTAAGAATATCGGGCGGGATTATATAAAATACTTTGCTGCCAGACTACCTGAGGTATTCTGCAAGGCTTACAGTCTGGTCGATCCATCTGTTCATTCAAGCATGAGGCATCTTTTTGGAACTTGGAAGGGAGTCTTTCCTCATCAGACCCTTCAGATGATTGAGAAGGAACTTGGCTTTACTGCTGCAGCCAATGGTTCATCTTCTGCATCCACTATACTCAAGAGTGATTCACAGTCACAACGCCCGCCTCATGGTATCCATGTGAATCCCAAGTATTTAGAAAGGCAGCGTCTTCAGCAGTCCAGTAGGGTAAAAGGAACTGCTAATGATATGACCGGAACTATTGCAAGCTCAACTGAGGACACAGAGAGGCTTGGTAGAGCTTTGGTTGCTTCACGACCTTGGGCTGATCCCAGACTTAACATGCGTAACATTATGCCTGCTAATAGAGATGCAGTTAAAAATTCTCTTCCTGAAAAGAGTATTAGTGCATCATATGGAGGCAATGGACATGGTTCTGATCTTTCCAGTAAAATTGGCTTGGATATTGGAAAAACTGGTGGTAGGGTCACTGATTTAGGACGTGATAACACATGGTACAAAACAGGCAGCGACGTTGCAGAGATTAAGTCTGGGCAAAGAAATGGTTTAAGTCTTAAGCATAGTATTTCAATTCATGAAGCCCCAAAATCCTTGAATTTGAATGCGCATCACCTGACAACACAAAGCACAACTAACCTACCCGTAAGGAGTAGTGTGATGTCAAGTAGCTGGAAAATTTCTGAGGAAGAGGAGTTCATGTGGGATGAGATGGACTCCAGGTTGACTGATTATGGTGCATCCAGTGTCTCTAATAACTTGGACAAAGATCATTGGACTGCTGATGGTGAAAATTTGGCAGTGGAAGATCACCTCCAACTGAATAGAGAAGTAACCACTGAATCTTTATCTTCTGGGAAGACACAACTGCCTGCTTATGGGCAACGTCCACCATTATCATGGCAATTGCAGGAGCAGCACACAATTGATGAGCTGAATTGTAAGCCAGGTCACTCAGAAGGCTTTGCATCCACTTTTGGTGGGTTACCAACAAGTAAAAAGTCTTATGCTGTCAGGATGGGGAATCAGCCTCTCCTGCCAAATGCAACAACAGGATTGGTAGGACAGAAAAAATTTCACTCTGTTCAAGCTGAATCCTCTTCTGGGCAGTCACCTTTACAACAGCAGTCTACATCACCACCAGTAACAGTGCACCATTCTTACCACATGCAAAATTTGGCTGAACGAGACCATCGACGGACTCTTAAAACATCTCAGTTTGCAGGAGATTTGCAGGGCAAATATATTCAAGATTCTTCAGCTGGCCTTCCTGCTAATGTTCAGAATGGAAACTTGCCAAAATCACAGCAAAGGGACTTGCAAGGTCCAGTACCTTCATTGACTTCTTTTCAACCTAGGCTTCGTACTGCAGTTTCACAGGAGCAGCAGCTTGGCTCTTCTTATACTGAAGTTTCTGATAAGACAGAGAAGCAACCCCAGTCAAAAGTTTCTCTTGTTGGTGAAACTTCTGATCAGTCAACCACAAGCAGTTTGTTAGCTGCAGTTATGAAGAGTGGGGTCTTTAATAGTTCAATTACAGGAAATCTACTCTCTACAAGTTTCCTGGATACAAGGATTCTGCCATTGCAAGCTCAGGTTCAGCCTAACCGGCCAGGTGAACCTCAGGGAAAGGTTGCATCGCCATCTTCGTTTGGTACTCCAAATGATGACTCATCTACTCTAGCAAAAGTATCTCAAGGAAAGCTTGGAGAACCACCAAGGGCATCTGCTCTACCTCTAGTTTCCTCTACTGTGAGTAGTGCCTCAGCTCAGACCTCAAATTCCACCAATACCTCAAGTCCAATTTCAAACCTTTTAAGTTCATTAGTTGAAAAGGGTTTGATATCGGCAAAATCAGAGACATCAACTAAGGTGCCAACTGATTTGCTGACTCAATCAGAAGATCAAGGCCACAGCATTTCGACAAATCGCTCTTCGCCAGTTGCTTTTGTTTCTGGTTCTGCAGCTGTCCCTGCATCATCTATTGCAGATGAGGAAGATCATGATGTAAACAGCTCTGTTTCCGTATCTCAGTCAGCCACCACAGAAATAAGAAACCTTATTGGCTTTGAGTTTAAGCCTGATGTAATCCGACAATGGCATTCATCTGTGATCAGAGAACTATTGGATGATCTTCCACATCATTGCAGGATTTGTGGCCTTAGGCTTAAGCATCAAAAACAGTTTAATGGACACTTGGAGTGGCATGCTTTGAGAGAAAAGGAACAAAGTGGTCTAAGTAGGGCATCAAGAAGATGGTATGCAAAGTCAGATGACTGGATTGCTGGCAAGGTTGAATATTCAACGGAGTCTGAGTCTACTGATTCTGTAGACGCGTACTGTGAGAAAGCAGACAAGACTGAGCTGGATACAATGGTACCATCAGATGAAAATCAATGCTTGTGCGTATTTTGTGGTGAGCTATTTGAAGATGTTTACTGTCAAGAAAGGGATGAGTGGATGTTCAAGGGGGCTGTTTACCTGGCCAACTCAGATAGTGATGATGAGATGGGTATCAGAAATGTCATTACTGTCAGGGGTCCCATTATTCATGCAAAATGCTTGTCAGAGACCTCCATATCCAGTGTTACCAAGATGATATTGGGTCTGCGTTCTGTACGAGGTCATTGGAGACCCGGTGATGTTGTTAGAAGCTTACAGAGGTTACCCAGCGGATTTGCACTTTTAGCCGCATCTGGTGCTCTTAAATGGTAA 3240 0.441 MDMENSRRSFDRMREPGMKKPRLTDDLERVPNQSVRPFPQRQVATAVNTLASARFRTNDRDSGSSESGRGPQQLLHQELVTQYKTALAELTFNSKPIITNLTIIADENIYAAKAIAATVCSNILEVPSEQKLPSLYLLDSIVKNIGRDYIKYFAARLPEVFCKAYSLVDPSVHSSMRHLFGTWKGVFPHQTLQMIEKELGFTAAANGSSSASTILKSDSQSQRPPHGIHVNPKYLERQRLQQSSRVKGTANDMTGTIASSTEDTERLGRALVASRPWADPRLNMRNIMPANRDAVKNSLPEKSISASYGGNGHGSDLSSKIGLDIGKTGGRVTDLGRDNTWYKTGSDVAEIKSGQRNGLSLKHSISIHEAPKSLNLNAHHLTTQSTTNLPVRSSVMSSSWKISEEEEFMWDEMDSRLTDYGASSVSNNLDKDHWTADGENLAVEDHLQLNREVTTESLSSGKTQLPAYGQRPPLSWQLQEQHTIDELNCKPGHSEGFASTFGGLPTSKKSYAVRMGNQPLLPNATTGLVGQKKFHSVQAESSSGQSPLQQQSTSPPVTVHHSYHMQNLAERDHRRTLKTSQFAGDLQGKYIQDSSAGLPANVQNGNLPKSQQRDLQGPVPSLTSFQPRLRTAVSQEQQLGSSYTEVSDKTEKQPQSKVSLVGETSDQSTTSSLLAAVMKSGVFNSSITGNLLSTSFLDTRILPLQAQVQPNRPGEPQGKVASPSSFGTPNDDSSTLAKVSQGKLGEPPRASALPLVSSTVSSASAQTSNSTNTSSPISNLLSSLVEKGLISAKSETSTKVPTDLLTQSEDQGHSISTNRSSPVAFVSGSAAVPASSIADEEDHDVNSSVSVSQSATTEIRNLIGFEFKPDVIRQWHSSVIRELLDDLPHHCRICGLRLKHQKQFNGHLEWHALREKEQSGLSRASRRWYAKSDDWIAGKVEYSTESESTDSVDAYCEKADKTELDTMVPSDENQCLCVFCGELFEDVYCQERDEWMFKGAVYLANSDSDDEMGIRNVITVRGPIIHAKCLSETSISSVTKMILGLRSVRGHWRPGDVVRSLQRLPSGFALLAASGALKW 1079
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere02g1134 1079 Pfam CID domain 84 193 IPR006569 -
Dere02g1134 1079 SUPERFAMILY ENTH/VHS domain 77 198 IPR008942 -
Dere02g1134 1079 MobiDBLite consensus disorder prediction 721 740 - -
Dere02g1134 1079 ProSiteProfiles CID domain profile. 75 203 IPR006569 -
Dere02g1134 1079 ProSitePatterns Zinc finger C2H2 type domain signature. 891 911 IPR013087 -
Dere02g1134 1079 MobiDBLite consensus disorder prediction 795 820 - -
Dere02g1134 1079 MobiDBLite consensus disorder prediction 532 558 - -
Dere02g1134 1079 MobiDBLite consensus disorder prediction 1 29 - -
Dere02g1134 1079 FunFam polyadenylation and cleavage factor homolog 4 72 200 - -
Dere02g1134 1079 MobiDBLite consensus disorder prediction 54 73 - -
Dere02g1134 1079 MobiDBLite consensus disorder prediction 212 265 - -
Dere02g1134 1079 MobiDBLite consensus disorder prediction 596 665 - -
Dere02g1134 1079 MobiDBLite consensus disorder prediction 708 757 - -
Dere02g1134 1079 MobiDBLite consensus disorder prediction 1 38 - -
Dere02g1134 1079 MobiDBLite consensus disorder prediction 212 226 - -
Dere02g1134 1079 Gene3D - 70 200 IPR008942 -
Dere02g1134 1079 SMART 558neu5 78 200 IPR006569 -
Dere02g1134 1079 PANTHER PRE-MRNA CLEAVAGE COMPLEX II 32 1038 IPR045154 GO:0000993|GO:0003729|GO:0006369|GO:0006378|GO:0006379
Dere02g1134 1079 MobiDBLite consensus disorder prediction 236 263 - -
Dere02g1134 1079 CDD CID_Pcf11 80 192 IPR047415 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere02g1134 Dere-ChrDere02 10857371 10864810 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere02g1134 78 417 C2H2 Transcription Factor Family AT4G04885 37.607 1.02e-52 197