Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere02g1123 ATGGAAGAAAAAGATATCCATGTATTCGGGTCGCCCGGCAACTCAGAGTCCGGGCCGCCACCACAACCCATCGGAGTCTTACCCCCGGTGACGAACATGGCGATGAACATGAACTTGCATAATAGTGGAGGGGCAACAGTAACAGATGCAGCAGCAGCCACAGCAACAATGACATCACCTGGAAGTACCGGAGGAGGGCAAGGGAGTTTTGATTTGTTTGGGAAAAAGAAGAGAGGAAGGCCAAGAAAATACGACTCAGATGGGAAGCTGAGGTTGACGACGTCGTACCACGGTGCACCATCACAACAAGGCTTTTCTTTGTCCCCAACTTCACCTTCTGAGTTCTCCTCCAAAAGGGGTCGAGGCAGACCACCTGGCTCTGGCAACTGGCAGCTCCTCGCATCTTTAGGTGAGTTGTTTGCAAACACAGCTGGTGGGGATTTTACACCTCATGTGGTCACTGTTCATACTGGAGAGGATGTTGCCGGAAAAATCTTGTCATTCGCCCAGAAAGGTCCTAGAGGAATTTGCGTTCTCTCCGCCAATGGAGCTATATCTAATGTCACTCTACGGCAGCCTGGTTCTTCTGGTGGATTATTGACATACGAGGGTCGATTTGAGATTTTATCGTTGTCCGGGTCATACACAATCGCTGACAGTGGTGGCATAAGAAGTCGAACTGGTGGGTTGAGTGTCTCACTGGCTGGCCCTGATGGGCGTGTGATAGGAGGTGGTGTTGCTGGTTTATTGACAGCCGCTAGTCCAATCCAAATTGTGGTGGGAAGCTTCATGCCGTGTGGTTACAAGGCACAGAAAAGAAAGCAACATCGTGAGAACACAGTGGCCTCTCCAGTTTCTGGTGCAGATACAGTGACAGCAGCAAGACCTATCTCGCAGGCAAATCCTGATGGTGGTGAAAATTGTTTGACACCTCTGTCCCAGCAGCTACCAGAACAAAGCCAGAGAGAATCAGACAACGTTACAACTAGTGATAAACAGAGCTTAGATGCCACACCCAATGTTTCTGATTGGAATGGCTTTGAAGAATTGTCGGATCAGGGGCCAACCCCAGACATCAATATATCTTTGCCTGGTGAATAG 1101 0.495 MEEKDIHVFGSPGNSESGPPPQPIGVLPPVTNMAMNMNLHNSGGATVTDAAAATATMTSPGSTGGGQGSFDLFGKKKRGRPRKYDSDGKLRLTTSYHGAPSQQGFSLSPTSPSEFSSKRGRGRPPGSGNWQLLASLGELFANTAGGDFTPHVVTVHTGEDVAGKILSFAQKGPRGICVLSANGAISNVTLRQPGSSGGLLTYEGRFEILSLSGSYTIADSGGIRSRTGGLSVSLAGPDGRVIGGGVAGLLTAASPIQIVVGSFMPCGYKAQKRKQHRENTVASPVSGADTVTAARPISQANPDGGENCLTPLSQQLPEQSQRESDNVTTSDKQSLDATPNVSDWNGFEELSDQGPTPDINISLPGE 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere02g1123 366 SMART AT_hook_2 75 87 IPR017956 GO:0003677
Dere02g1123 366 SMART AT_hook_2 118 130 IPR017956 GO:0003677
Dere02g1123 366 MobiDBLite consensus disorder prediction 56 128 - -
Dere02g1123 366 CDD DUF296 149 263 IPR005175 -
Dere02g1123 366 ProSiteProfiles PPC domain profile profile. 145 288 IPR005175 -
Dere02g1123 366 Gene3D - 150 282 - -
Dere02g1123 366 MobiDBLite consensus disorder prediction 95 117 - -
Dere02g1123 366 MobiDBLite consensus disorder prediction 1 26 - -
Dere02g1123 366 MobiDBLite consensus disorder prediction 316 349 - -
Dere02g1123 366 MobiDBLite consensus disorder prediction 316 366 - -
Dere02g1123 366 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 49 323 IPR039605 GO:0003680
Dere02g1123 366 FunFam AT-hook motif nuclear-localized protein 1-like 150 281 - -
Dere02g1123 366 Pfam Plants and Prokaryotes Conserved (PCC) domain 150 263 IPR005175 -
Dere02g1123 366 MobiDBLite consensus disorder prediction 73 90 - -
Dere02g1123 366 SUPERFAMILY AF0104/ALDC/Ptd012-like 147 273 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere02g1123 Dere-ChrDere02 10736358 10739226 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere02g1123 75 300 AT-hook Motif Nuclear Localized (AHL) Family AT4G12080 55.319 1.73e-70 223
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere02g1123 02 10736358 10739226 Dere02g1123 02 10736358 10739226 ECH