Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere02g1111 ATGCACAGTTGTGGCAGAGACCAGAAAGTGAAGGCAGATATGGAATGGAATGGAAGCATAAGACCCTTTGATCCTCGAGCAGAGTCTTCGTTGAGTTTCCTCTACAACTATAACTGCAGCCCATTTCCAGGAATGGAAGTGAAGCATGCAGCAGCAGCAGCAGCACAAGGGTTGGTTCCGGAAATGGAGAAAATGAAGTACGGAAACCAACTGGAGAAGAAAAAGCGATTAACAGGTGAGCAGCTTGAGTCGCTGGAGAGGAGTTTCCAGGAGGAGATAAAGTTGGAACCTGACAGGAAGATGAAGCTTTCAAGGGAGCTAGGGCTGCAGCCTCGCCAAATTGCTGTTTGGTTCCAAAATAGGCGTGCTAGGTGGAAGGCTAAGCAGCTCGAGAACTTGTATGATACCCTTAAACAAGAATTTGATGCAATCTCTCGGGAAAAACAGAGGCTTCAAGAAGAGGTTGTGAAGTTGAAGGCAATACTAAGAGAGCAAGCTTCAAAGACACAGGTTTCTGCAGGATATACAGAAGTATCTGGGGAAGAAACAGTAGAAAGCACGTCAGAAGCAGCAATGCGTAGCTCTACCAAGCAGCCACGGGGAATTATGAGCCATCATCAACAGAATATTGCAGAGGCCAATTGTTCTTTCACTGTGGAGGATTATAGCACTGTTTCACTGCCCTACTGGCCTGCTCTGATGCCATATTATCCTTAA 717 0.463 MHSCGRDQKVKADMEWNGSIRPFDPRAESSLSFLYNYNCSPFPGMEVKHAAAAAAQGLVPEMEKMKYGNQLEKKKRLTGEQLESLERSFQEEIKLEPDRKMKLSRELGLQPRQIAVWFQNRRARWKAKQLENLYDTLKQEFDAISREKQRLQEEVVKLKAILREQASKTQVSAGYTEVSGEETVESTSEAAMRSSTKQPRGIMSHHQQNIAEANCSFTVEDYSTVSLPYWPALMPYYP 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere02g1111 238 SUPERFAMILY Homeodomain-like 63 130 IPR009057 -
Dere02g1111 238 ProSitePatterns 'Homeobox' domain signature. 103 126 IPR017970 GO:0000981|GO:0006355
Dere02g1111 238 ProSiteProfiles 'Homeobox' domain profile. 68 128 IPR001356 GO:0003677
Dere02g1111 238 SMART HOX_1 70 132 IPR001356 GO:0003677
Dere02g1111 238 Pfam Homeobox associated leucine zipper 128 162 IPR003106 GO:0006355|GO:0043565
Dere02g1111 238 Pfam Homeodomain 73 126 IPR001356 GO:0003677
Dere02g1111 238 Coils Coil 120 168 - -
Dere02g1111 238 Gene3D - 67 136 - -
Dere02g1111 238 CDD homeodomain 73 129 IPR001356 GO:0003677
Dere02g1111 238 PRINTS Lambda-repressor HTH signature 108 124 IPR000047 GO:0003677
Dere02g1111 238 PRINTS Lambda-repressor HTH signature 99 108 IPR000047 GO:0003677
Dere02g1111 238 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 64 204 IPR045224 GO:0003700
Dere02g1111 238 FunFam Putative homeobox-leucine zipper protein ATHB-51 70 133 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere02g1111 Dere-ChrDere02 10639451 10641701 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere02g1111 29 158 Homeobox Transcription Factor Family AT5G03790 58.696 1.26e-46 151
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Dere02g1111 Homeodomain 1.9e-16 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere02g1111 02 10639451 10641701 Dere02g1111 02 10639451 10641701 ECH