Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere02g1108 ATGGTTCTCAAGACGGAACTTTGCCGTTTTAGTGGGGCCAAGATCTACCCTGGGAAAGGCATTAGATTTGTTCGTGCTGATTCTCAGGTCTTCTTGTTTGCCAACTCAAAATGCAAAAGGTACTTCCACAACAGATTGAAGCCATCAAAACTCACCTGGACTGCCATGTATAGGAAGCAACACAAGAAGGACATTGCCCAAGAAGCTGTGAAGAAGAGGCGCCGCACTACCAAAAAGCCTTACTCTAGGTCTATTGTTGGCGCTACTTTGGAAGTTATACAGAAGAAAAGAACTGAGAAACCGGAGGTCCGTGATGCCGCTAGGGAAGCTGCTCTCCGTGAATTAAAGGAGAGGATCAAGAAAACAAAGGACGAGAAGAAGGCAAAGAAGGCAGAAGTAATGGCGAAGGCACAAAAAGCACAAGGCAAAGGCAACGTTCCCAAGGGTGCCGGACCTAAAGGCCCTAAACTTGGTGGTGGAGGCGGGAAGCGCTGA 495 0.4808 MVLKTELCRFSGAKIYPGKGIRFVRADSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQHKKDIAQEAVKKRRRTTKKPYSRSIVGATLEVIQKKRTEKPEVRDAAREAALRELKERIKKTKDEKKAKKAEVMAKAQKAQGKGNVPKGAGPKGPKLGGGGGKR 164
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere02g1108 164 Pfam Ribosomal protein L24e 4 67 IPR000988 -
Dere02g1108 164 SMART 4TRASH 8 46 IPR011017 -
Dere02g1108 164 PANTHER 60S RIBOSOMAL PROTEIN L24 4 156 IPR000988 -
Dere02g1108 164 MobiDBLite consensus disorder prediction 117 136 - -
Dere02g1108 164 ProSitePatterns Ribosomal protein L24e signature. 10 27 IPR023442 -
Dere02g1108 164 MobiDBLite consensus disorder prediction 62 81 - -
Dere02g1108 164 Coils Coil 105 143 - -
Dere02g1108 164 CDD Ribosomal_L24e_L24 3 56 IPR000988 -
Dere02g1108 164 FunFam 60S ribosomal protein L24 3 64 - -
Dere02g1108 164 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 6 58 - -
Dere02g1108 164 Gene3D - 69 143 - -
Dere02g1108 164 MobiDBLite consensus disorder prediction 117 164 - -
Dere02g1108 164 Gene3D Ribosomal protein L24e 3 64 IPR038630 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere02g1108 Dere-ChrDere02 10597926 10599889 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere02g1108 1 157 Cytoplasmic Ribosomal Protein Gene Family AT2G36620 84.076 7.07e-88 252
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere01g2765 01 42517324 42519356 Dere02g1108 02 10597926 10599889 CCT
Dere02g1108 02 10597926 10599889 Dere02g1108 02 10597926 10599889 ECH