Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere02g1107 ATGGGAGATAAGCACGAAGAAGATCGGACTGAGAGCAGCGATTTCACGTCAGAGGACGAAGGCACCGAAGACTATCGACGTGGAGGTTACCACGCTGTGCGAATCGGTGATACCTTCAAGAATGGTCGCTATGTCGTTCAGAGCAAGCTCGGTTGGGGGCATTTCTCCACAGTCTGGCTCGCTTGGGACACCCAACTTTCTAGATACGTGGCTCTAAAGGTTCAAAAAAGCGCCCAGCATTACACTGAGGCAGCCATGGACGAGATAACCATTTTACAGCAGATTGCAGATGGAGACCCAGATGATAAAAAGTGTGTGGTGAAGCTTTTGGATCATTTCAAGCATTCAGGTCCCAATGGACACCATGTTTGTATGGTATTTGAATACCTTGGGGATAATCTTTTAACTCTTATCAAGTATACTGATTACCGAGGATTGCCAATCAACATGGTTAAAGAGATATGCTTTCACATTTTGGTTGGATTGGATTACTTACATAAGCAGCTCTCTATCATACATACTGACTTGAAACCTGAGAACATCCTCCTATTATCAATGATAGATCCATTGAAGGATCCTAGAAAGTCTGGTGCTCCCCTAGTTCTCACAAATACTAAAGATAGAACAGCACTGGAGTTGGGAATTGGGAAAGATATGAAAGCATCAAATGGGGATTTACTTTGGAATCATAAGAAGAGGATTAAAAGAAAAGCTAAGCAGGCGGCGCAGGGATGTGCAGAGAAGGAGGCTTCTGAGGAAGTTGAGGGGGATCCCGAAACCTCTGGTGCTCTAGAATCATCAGGGAATGCAATATTGAATGCAGTTTCTGTAGGAGAACAAGCTTCAAGTTCTGCAGGCACCAATAGGTTATCAGATGCTGATGGAACAAAGGTAACTTGGTCAGAAAACCAGGGTAACAAAAGAGGAAGCCGCTCAATAAGACAGAAGCTGCTGGCATCAGTTGACCTCAAGTGCAAATTAGTTGACTTCGGCAATGCTTGCTGGACATATAAACAATTTACAAATGATATCCAGACAAGACAATATCGGTGTCCAGAAGTGATCCTTGGATCAAAATATTCTACTTCAGCAGATCTTTGGTCCTTTGCTTGCATTTGCTTCGAGCTTGCAACTGGTGATGTACTATTTGATCCTCATAGTGGTGATAACTTTGATAGAGATGAGGATCACTTAGCACTAATGATGGAGCTTCTAGGAATGATGCCACGTAAGATTGCACTCGGAGGGCGTTACTCCCGTGATTTCTTCAATAGATATGGTGATTTGAGGCACATCCGCCGGTTGCGTTTTTGGCCCTTGAGCAAAGTCCTCGTGGAGAAATATGATTTGAGTGAGAGAGATGCAAATGACATGACGGACTTTCTGGTTCCTATTCTTGATTTCGTTCCTGAGCAACGACCAACAGCTGGTCAGTGCCTTCTTCATCCATGGATGAATGCTGGCCCACGCCTTTTGGAGCCGTCTGTGCCTTCTTCCAACCACGGCCCAGCTGCGGATGGTGCCATTTCTGACCAAAAGAAAAAGGACAAGGACGAGAGAGAGGCCATGGAGGCTGGGATGGGAAATATCGCTATCAATTCAGATTCTAAACCCCACACAGATTCATCAACCAAAGCCTTCCAAAGCAGTCAGAAGTAG 1659 0.4485 MGDKHEEDRTESSDFTSEDEGTEDYRRGGYHAVRIGDTFKNGRYVVQSKLGWGHFSTVWLAWDTQLSRYVALKVQKSAQHYTEAAMDEITILQQIADGDPDDKKCVVKLLDHFKHSGPNGHHVCMVFEYLGDNLLTLIKYTDYRGLPINMVKEICFHILVGLDYLHKQLSIIHTDLKPENILLLSMIDPLKDPRKSGAPLVLTNTKDRTALELGIGKDMKASNGDLLWNHKKRIKRKAKQAAQGCAEKEASEEVEGDPETSGALESSGNAILNAVSVGEQASSSAGTNRLSDADGTKVTWSENQGNKRGSRSIRQKLLASVDLKCKLVDFGNACWTYKQFTNDIQTRQYRCPEVILGSKYSTSADLWSFACICFELATGDVLFDPHSGDNFDRDEDHLALMMELLGMMPRKIALGGRYSRDFFNRYGDLRHIRRLRFWPLSKVLVEKYDLSERDANDMTDFLVPILDFVPEQRPTAGQCLLHPWMNAGPRLLEPSVPSSNHGPAADGAISDQKKKDKDEREAMEAGMGNIAINSDSKPHTDSSTKAFQSSQK 552
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere02g1107 552 MobiDBLite consensus disorder prediction 508 524 - -
Dere02g1107 552 Gene3D Transferase(Phosphotransferase) domain 1 127 486 - -
Dere02g1107 552 Pfam Protein kinase domain 44 184 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere02g1107 552 Pfam Protein kinase domain 318 485 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere02g1107 552 MobiDBLite consensus disorder prediction 282 307 - -
Dere02g1107 552 PANTHER PROTEIN KINASE DOMAIN-CONTAINING PROTEIN-RELATED 10 517 - -
Dere02g1107 552 MobiDBLite consensus disorder prediction 239 265 - -
Dere02g1107 552 ProSitePatterns Serine/Threonine protein kinases active-site signature. 171 183 IPR008271 GO:0004672|GO:0006468
Dere02g1107 552 CDD STKc_SRPK 33 485 - -
Dere02g1107 552 MobiDBLite consensus disorder prediction 533 552 - -
Dere02g1107 552 FunFam Serine/threonine-protein kinase SRPK-like protein 315 485 - -
Dere02g1107 552 ProSitePatterns Protein kinases ATP-binding region signature. 50 73 IPR017441 GO:0005524
Dere02g1107 552 SMART serkin_6 44 485 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere02g1107 552 SUPERFAMILY Protein kinase-like (PK-like) 39 497 IPR011009 -
Dere02g1107 552 MobiDBLite consensus disorder prediction 1 24 - -
Dere02g1107 552 ProSiteProfiles Protein kinase domain profile. 44 485 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere02g1107 552 Gene3D Phosphorylase Kinase; domain 1 20 126 - -
Dere02g1107 552 FunFam CMGC/SRPK protein kinase 30 129 - -
Dere02g1107 552 MobiDBLite consensus disorder prediction 491 552 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere02g1107 Dere-ChrDere02 10590894 10596057 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere02g1107 10 537 EF-hand Containing Proteins AT5G22840 68.927 0.0 735
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_SRPK Dere02g1107 Pkinase 1.3e-19 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere02g1107 02 10590894 10596057 Dere02g1107 02 10590894 10596057 ECH