Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere02g1089 ATGGCGGAATCAGCTTCTGGTGACTCCCCGTACACCCCTCCGCCTCCGGAGAGCAAGCCAGCACCTACCGAGCGTAAGAGTTGGGCCGATGAAGCAGACGAAGAAGTTCCAAATGAAACCAATGCGGCCTCCGGCTCATCATCAGCCTCCTCGCTTAACGTTGACGGATTAGCCATCGACGAGAATAAGAAGATTACTAAGTTCTTGGACGAACCCGAGGACTCCAACATCCAAGCGGTTACATCTGGTGATACTCCATATACCTCAGCGAGCACCTTTGAAGATTTGAATCTCTCTCCGGAGTTGCTTAAAGGATTGTATGTTGAGATGAAATTCCAGAAGCCTAGCAAAATTCAAGCTATCAGTTTGCCAATGATTTTGAGCCCCCCTTTTAAGGATTTGATCGCACAGGCACATAATGGTTCAGGTAAGACAACATGTTTTGTGCTTGGAATGCTTAGTCGTGTTGATCCTAAGCTGCAGGCTCCTCAAGCTCTCTGCATTTGTCCAACTAGAGAATTAGCTATTCAGAATGCGGAAGTTCTTCGAAAGATGGGCAAATACACTGGGATTAGTTCAGAATGTGCCATACCAACAGACAGCAGAGACTCTATTCCAATATCAAAACGGGCACCTATTATGGCACAAGTAGTGATTGGGACTCCTGGTACCTTGAAGAGGTGGATGTCATTTAAGAAACTGAGTGTAGTCAGATTAAAAATTCTTGTCTTTGATGAGGCTGATCAAATGCTTGCTGAGGATGGTTTTAAAGATGATTCTTTGAGGATAATGAAAGACATAGAAAAAGTCAATACTAACTGTCAGGTTCTTCTGTTTTCTGCTACATTTAATGACATTGTCAAGAATTTTGTTTCAAGGACAGTTAAAAAGGATCATAATCAACTTTTTGTGAAGAAAGAAGAACTATCTTTAGAGGCAGTGAAGCAATACAAGGTGATATGTCTTGATGAACTTTCTAAGATCGAAGTGATTAAGGATTATATTTTCGAAATAGGAGAGAATGTGGGCCAAACTATTATATTTGTACGCACAAGAAATAGTGCAAAGATGTTGCATAAAGCACTTGTTGATTTGGGCTATGAGGTTACTTCCATACAAGGTGCTCTTGAGCATGAAGAAAGAGATAAGATTGTCAAGGAGTTCAGGGATGGTTTGACTCAAGTTCTTATATCAACTGATGTTCTTGCCCGAGGGTTTGATCAGCAGCAGGTCAATTTGGTTATCAATTATGATCTTCCCGTGAAACATACTGCTGAGTATACACGTGAACCTGAGCCTGATTATGAGGTGTATTTGCACAGAGTTGGTAGGGCTGGACGTTTTGGGCGCAAGGGTGCTGTATTTAACCTGGTATGTGGTGAAAGGGATGAAAATCTCATGGCGAAGATTGAGAAGCACTTTGGCACTCAAGTGGCTGAGGTACGAGAAAAAAGTGTTGAAGACTACAAAGGAGCTCTTAAGGAGGCTGGTTTACTGCAATGA 1503 0.4232 MAESASGDSPYTPPPPESKPAPTERKSWADEADEEVPNETNAASGSSSASSLNVDGLAIDENKKITKFLDEPEDSNIQAVTSGDTPYTSASTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILSPPFKDLIAQAHNGSGKTTCFVLGMLSRVDPKLQAPQALCICPTRELAIQNAEVLRKMGKYTGISSECAIPTDSRDSIPISKRAPIMAQVVIGTPGTLKRWMSFKKLSVVRLKILVFDEADQMLAEDGFKDDSLRIMKDIEKVNTNCQVLLFSATFNDIVKNFVSRTVKKDHNQLFVKKEELSLEAVKQYKVICLDELSKIEVIKDYIFEIGENVGQTIIFVRTRNSAKMLHKALVDLGYEVTSIQGALEHEERDKIVKEFRDGLTQVLISTDVLARGFDQQQVNLVINYDLPVKHTAEYTREPEPDYEVYLHRVGRAGRFGRKGAVFNLVCGERDENLMAKIEKHFGTQVAEVREKSVEDYKGALKEAGLLQ 500
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere02g1089 500 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 163 468 IPR027417 -
Dere02g1089 500 CDD SF2_C_DEAD 314 458 - -
Dere02g1089 500 Gene3D - 70 308 IPR027417 -
Dere02g1089 500 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 125 301 IPR014001 -
Dere02g1089 500 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 54 470 - -
Dere02g1089 500 SMART helicmild6 356 449 IPR001650 -
Dere02g1089 500 Pfam Helicase conserved C-terminal domain 327 449 IPR001650 -
Dere02g1089 500 MobiDBLite consensus disorder prediction 1 53 - -
Dere02g1089 500 SMART ultradead3 111 317 IPR014001 -
Dere02g1089 500 MobiDBLite consensus disorder prediction 39 53 - -
Dere02g1089 500 CDD DEADc_DDX19_DDX25 98 297 - -
Dere02g1089 500 Gene3D - 309 490 IPR027417 -
Dere02g1089 500 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 330 490 IPR001650 -
Dere02g1089 500 Pfam DEAD/DEAH box helicase 117 289 IPR011545 GO:0003676|GO:0005524
Dere02g1089 500 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 91 120 IPR014014 GO:0003724
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere02g1089 Dere-ChrDere02 10404120 10408538 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere02g1089 84 481 Eukaryotic Initiation Factors Gene Family AT1G72730 36.829 3.98e-71 230