Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere02g1085 ATGTGTGTTCGGCAGGACGCAATGCCGGTGCCTCCATGGCTTGAGCCTCTCCTAAACACATCGTTTTTCAGCGTGTGTCGGATTCACGGAGACGCCGCTAGGAGCGAGTGTAACATGTACTGCCTCGACTGCAATCGCGACCCATTTTGCTTTTATTGCCGTTCTTCAAGGCACAAGGATCATCAAGTCATTCAGATAAGAAGATCATCGTATCACGATGTAGTGAGAGTGGCTGAGATTCAGAAGGTATTGGATATAAGTGGAGTGCAGACGTATGTGATTAACAGTGCAAGAGTGCTGTTTCTGAACGAGAGGCCTCAGCCAAAGTCATCTGGGAAAGGAGGAGTGGCTCACATTTGTGAGATTTGTGGAAGAAGCCTCTTGGACCCATTTCGTTTTTGTTCTTTGGGTTGCAAGCTTGTAGGAATAAAGAGAAATAGGGATGCAAGCTTTGGGTTGGAGGGGGCATTGTCAAAGGGATCAGTGTCTTACAGACAAGAAGAAGAATTGCGTGAAGGGTCACAACAAGATATGTACCCGGCCACGCCTCCTCCTCCGGCTGCTTCAACTGCAAGAAGAAGAAAAGGCATTCCTCACAGGGCTCCTTTTGCCTCCTAA 618 0.4822 MCVRQDAMPVPPWLEPLLNTSFFSVCRIHGDAARSECNMYCLDCNRDPFCFYCRSSRHKDHQVIQIRRSSYHDVVRVAEIQKVLDISGVQTYVINSARVLFLNERPQPKSSGKGGVAHICEICGRSLLDPFRFCSLGCKLVGIKRNRDASFGLEGALSKGSVSYRQEEELREGSQQDMYPATPPPPAASTARRRKGIPHRAPFAS 205
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere02g1085 205 Gene3D Classic Zinc Finger 24 69 - -
Dere02g1085 205 SUPERFAMILY B-box zinc-binding domain 24 68 - -
Dere02g1085 205 Pfam PLATZ transcription factor 67 140 IPR006734 -
Dere02g1085 205 PANTHER PLATZ TRANSCRIPTION FACTOR FAMILY PROTEIN 9 203 - -
Dere02g1085 205 MobiDBLite consensus disorder prediction 163 205 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere02g1085 Dere-ChrDere02 10364067 10365228 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF PLATZ Dere02g1085 PLATZ 5e-30 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere01g2782 01 42703984 42705256 Dere02g1085 02 10364067 10365228 CCT