Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere02g1080 ATGAAGCAAGACTTGGAATCAACGGCTGTTTTGGAAGGCCAGTCTCATGATGCATTCTTTCCAACTCCGGCTTCGGAAACTCAAGCTGGTTCTCAGTCCCAGACGATGCTCAGTGTGCAGGTTTCTGAGAATAGCAGGTCTAAGATAGTTAGAATAGTGAATGGTTATATAGTTTATACGCGAGAAAAGAAGTCTCGACGTTTGTGTGATGGGCCGTCTGAGAATGGAAAGTTTAAGAAACTCAAGACCTCTGTAGAACTGCAAGCAAATGTACACCTTCCTGTGGCGGATGGTGAAGGCGGTGTAACGGTAGACAATGTAGATCATAGAATGGAAATCGGAGTCGATTGCAGTATAGAGATGCATAAAAGCTGCAATGAGCCAGAGAGGGATCCCGCGCAAAATTTTGCTGGGGAAGGTGGCTTCAATAATGATGTTGATGTACAGAAAGATGTTGTAGTTAAGACATTGAAGCGGTATACTCGATCAGCACTGAAAACAAAGGTTAACTGTTCTGATAAGGCAATGAATGTTTCAGAAGCTGCCCAGAATGCAAATACTAAATCAGATGGGAAGGTAAATGCTGCTGCCGGCTCATTAACAACTCCAAGAAACAAGTTGGAATTGAAGATGTCAAAAAAGATTGTGCTCAACAAGAAGCCTATGACCGTCAAGGAGCTCTTCGATACTGGTCTATTGGATGGGGTTTCAGTAGTTTACATGGGCGGCAAGAAGGCTTCGGCACTGCGAGGCATAATCAAAGATGGGGGAATATTGTGCTCATGCTGTCTGTGCAATGGACGCAGGGTTATTCCACCGTCCCAATTCGAAATTCATGCATGCAAAGCGTATAAGCGAGCAGCACAGTACATTTGCCTGGAGAATGGGAAGAGCCTACTTGAGCTATTGAGAGCATGCAGGGGAGCTCCCTTACATACACTGGAGGCGACAATTCAGAACGTTGTTTCTTCTCCACCCGAAGAAAAATATTTTACTTGTAAAATGTGCAAGGTATGTTTCCCTCCTTCTTGTGTGGAAAGAGTAGGGTCTATATGCAGTTCTTGCAAGGAATCCAAGGAATCTGTGGACAATTCTATTGATGCAGTCGGCAAAAGAGTCAGGTCCCCTAGACCAGTATCCGTCTCCAAGCAATCTGGTACTTCTGAGCAGTGTATCACTTCACAGATTAAGAGACACTGGAAGAGAAAAACAAAGTCATCAAAATGGGTTAGCTGCTCAAAGTCTTCCAAGAGTTCTTCAGTGCCTATCTTATCGCGAAAGAAGGGTCTGTGGAGGATGAAAAAGAAGTCATCAAAATTGTCAGTAAAATTAAAGACTCCAAGAACTACTTCAAAGTCAAAGTGTTCATCTTCACCAAATAAGAGTCAGTGGAGGATCACTAAAAAGCATCAGCAGTTGCATAAGTTAGTTTTTGAGGAAGGTGGATTGCCTGATGGTACTGAAGTAGCTTATTATGCACGTGGACAGAAACTGCTTGAGGGTTACAAAAAGGGCTTTGGAATAATGTGTCGATGCTGCAACTCTGAGGTCAGCCCCTCACAGTTTGAGGTCCATGCAGGCTGGGCTTCCCGCAAGAAACCTTATGCATACATCTATACATCAAATGGGGTGTCTCTCCATGAGTTAGCTATATCTCTCTCAAAAGGCCGCAAATACGCTGCAAAGGATAATGATGATCTGTGCATTATTTGTTGGGATGGTGGAGATCTGTTGCTTTGTGATGGATGCCCAAGGGCATTTCATAAAGAATGTGTATCTCTGTCAAGTATTCCGCATGGTGACTGGTACTGTAAGTTTTGTCAAAACATGTTCCAAAGAGAAAGGTTTGTGGCACACAATGCCAATGCTGTGGCTGCTGGAAGGGTTGAAGGAATTGATCCTATTGAGCAGATAACCAAGAGATGCATACGCATTGTTGAAGATGTTGATGCTGAGCTTAGTGGGTGTGCTTTATGCAGGGGTTATGACTTCAGTAAATCAGGATTTGGTCCGCGAACAATAATAATCTGTGATCAGTGTGAAAAGGAATTTCATGTTGGCTGCTTGAGGGATCATAAAATGTCTTATTTGAAGGAACTGCCAAAAGGGGATTGGTTTTGTAGCCATGATTGCTCAACAATACATTCTACTTTTCAGAACCTTCTGGTTAGGGGGGCTGAGAAACTCCCAGAGCCTCTCTTGGATGTTATAAAAAAGAAGCAAGAGGAAAAAGGTTTAGAATACCTCAGTAATATTGATGTGCGATGGAGGCTTCTTAGGGGCAAAATTGCTTCTCCTGAAACTAGGCCGTTTCTTTTGCAGGCTATCTCAATCTTTCATGAATGCTTTGATCCTATAGTTGATTCAATTACTGGACGTAACCTTATCACGGCCATGGTTTATGGAAGGACTGTGCGGAGACAAGAGTTTGGATCAATGCATTGTGCAATTCTATTGTTCAATTCAACTGTGGTATCCGCTGCCTTGCTTCGAATTTTTGGCAGTGATTTTGCAGAACTCCCTCTAGTTGCAACTAGTAGGGTTAACCATGGAAAGGGATACTTCCAAATACTATATTCCTGCATCGAGAAACTGCTGACTTCATTGAACGTGAAGCACCTTATCCTACCAGCTGCTGAAGAAGCAGAGTCCATATGGATAGAGAAATTTGGGTTCAAAAAGATGACACCGGACGAGCTTATCAACTACAGAAAGAACTCCAATCAGTTAGTGATATTCCAAGGAACATCCATGCTTCATAAGATGGTCAGTCCGTGTCCAGTAATCGAAAGTCAATCCTGA 2802 0.43 MKQDLESTAVLEGQSHDAFFPTPASETQAGSQSQTMLSVQVSENSRSKIVRIVNGYIVYTREKKSRRLCDGPSENGKFKKLKTSVELQANVHLPVADGEGGVTVDNVDHRMEIGVDCSIEMHKSCNEPERDPAQNFAGEGGFNNDVDVQKDVVVKTLKRYTRSALKTKVNCSDKAMNVSEAAQNANTKSDGKVNAAAGSLTTPRNKLELKMSKKIVLNKKPMTVKELFDTGLLDGVSVVYMGGKKASALRGIIKDGGILCSCCLCNGRRVIPPSQFEIHACKAYKRAAQYICLENGKSLLELLRACRGAPLHTLEATIQNVVSSPPEEKYFTCKMCKVCFPPSCVERVGSICSSCKESKESVDNSIDAVGKRVRSPRPVSVSKQSGTSEQCITSQIKRHWKRKTKSSKWVSCSKSSKSSSVPILSRKKGLWRMKKKSSKLSVKLKTPRTTSKSKCSSSPNKSQWRITKKHQQLHKLVFEEGGLPDGTEVAYYARGQKLLEGYKKGFGIMCRCCNSEVSPSQFEVHAGWASRKKPYAYIYTSNGVSLHELAISLSKGRKYAAKDNDDLCIICWDGGDLLLCDGCPRAFHKECVSLSSIPHGDWYCKFCQNMFQRERFVAHNANAVAAGRVEGIDPIEQITKRCIRIVEDVDAELSGCALCRGYDFSKSGFGPRTIIICDQCEKEFHVGCLRDHKMSYLKELPKGDWFCSHDCSTIHSTFQNLLVRGAEKLPEPLLDVIKKKQEEKGLEYLSNIDVRWRLLRGKIASPETRPFLLQAISIFHECFDPIVDSITGRNLITAMVYGRTVRRQEFGSMHCAILLFNSTVVSAALLRIFGSDFAELPLVATSRVNHGKGYFQILYSCIEKLLTSLNVKHLILPAAEEAESIWIEKFGFKKMTPDELINYRKNSNQLVIFQGTSMLHKMVSPCPVIESQS 933
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere02g1080 933 Gene3D - 764 922 - -
Dere02g1080 933 ProSitePatterns Zinc finger PHD-type signature. 568 607 IPR019786 -
Dere02g1080 933 CDD PHD1_AIRE 567 607 - -
Dere02g1080 933 MobiDBLite consensus disorder prediction 1 32 - -
Dere02g1080 933 SMART PHD_3 567 608 IPR001965 -
Dere02g1080 933 SMART PHD_3 655 712 IPR001965 -
Dere02g1080 933 ProSiteProfiles Zinc finger PHD-type profile. 565 610 IPR019787 -
Dere02g1080 933 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 652 714 IPR013083 -
Dere02g1080 933 FunFam Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain 554 631 - -
Dere02g1080 933 Pfam PHD-finger 568 609 IPR019787 -
Dere02g1080 933 SUPERFAMILY FYVE/PHD zinc finger 556 609 IPR011011 -
Dere02g1080 933 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 811 897 IPR016181 -
Dere02g1080 933 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 554 637 IPR013083 -
Dere02g1080 933 SUPERFAMILY FYVE/PHD zinc finger 645 709 IPR011011 -
Dere02g1080 933 Pfam Tify domain binding domain 501 551 IPR032308 -
Dere02g1080 933 Pfam Tify domain binding domain 251 306 IPR032308 -
Dere02g1080 933 PANTHER AUTOIMMUNE REGULATOR 7 922 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere02g1080 Dere-ChrDere02 10315905 10323218 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere02g1080 213 930 PHD Transcription Factor Family AT2G36720 53.020 0.0 798
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Dere02g1080 TDBD 5.3e-13 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere01g2789 01 42748773 42758276 Dere02g1080 02 10315905 10323218 CCT
Dere02g1080 02 10315905 10323218 Dere02g1080 02 10315905 10323218 ECH