Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere02g1079 ATGATATTCAACAAGACCCTCTTCTGTTGTCTCTCTGCCTTTATCACCTTTTCCCTTTTCATTATAATTATTTGTTATGTCACGTCTCCTTCCTCCACCACTATCTCTTCCATTGATCCTCAACATAATTTCAAGCAACTTGGTAGTTTCAGTAGGATTATAAAGCTAAGTGGCGTTGAAGACTTAGTGTCTCTAATAACAAGTGTTGCAAGGAGGCATCACCACCGAAGGAAGTACAAGGAGAAATGTGGCAAGACCAAATGGGATTCCAATCTCATTTTGGACTACAATGTCAGTATTGTTTTGACGGTTGGCTTAAACGGTTGTGCCAACTTTACTAGTGTGCAAAAAGCAGTGGATGCTGCTCCTGAATCTAGCCCTGATAGGACCCTCATCATTATCGATTCTGGCACATACAGGGAGAAGGTAGTGGTGGGGGAGAACAAAACAAACTTAATACTTCAAGGTCAAGGATATTTGAACACAGTCATAGAATGGAATGATACCTCCAATTCTACGGGAGGGACTGCTAATAGCTACTCAGTTGCCATATTTGCTTCTAAGTTCATCGCTTACAATATTAGCTTTAAGAATACAGCTCCGGCACCGTCACCGGGTGTTGTTGGAGGACAAGCAGTGGCATTAAGAGTGAGTGGTGATCAAGTAGCATTCTATGGATGTGGAATGTATGGTGCTCAGGACACGATCAATGATGATCATGGGAGACATTATTATAAAGAATGTTTCATCCAAGGATCCATTGACTTCATATTTGGAAACGCTAGATCCCTTTATGAGGATTGCACCATAAACTCTATAGCAGAAGATATAGGGGTTGAGATTAGCGGGTCCATCACAGCTCAAGGGAGGCAGTCAGAGAAGGAGGAAACTGGATTTTCATTTGTGAATTGCAGGATTGATGGAAGTGGGAAAGTGTGGCTTGGAAGAGCTTGGGGAGCATATGCCACTGTGGTCTTCTCGACAACAAATATGTCTGATGTCGTAGTTGCTGAAGGATGGAACGACTGGTCTAATTCCACCAGAGATAAGAGCGTCTTTTTTGGGGAATATCACTGTTTTGGTGAGGGAGCTAACTACAGGGCTAGAGTCTCATATGGGAAGCAACTCAAAGACTATGAAGCAGCTCCCTACATGGATGTTTCATACATTAATGGAGAGGATTGGCTTCTCAATCATACAAGTAGATCTTATGGCTCCTTCGTAATAAGTAATCATTCATACTAG 1245 0.4217 MIFNKTLFCCLSAFITFSLFIIIICYVTSPSSTTISSIDPQHNFKQLGSFSRIIKLSGVEDLVSLITSVARRHHHRRKYKEKCGKTKWDSNLILDYNVSIVLTVGLNGCANFTSVQKAVDAAPESSPDRTLIIIDSGTYREKVVVGENKTNLILQGQGYLNTVIEWNDTSNSTGGTANSYSVAIFASKFIAYNISFKNTAPAPSPGVVGGQAVALRVSGDQVAFYGCGMYGAQDTINDDHGRHYYKECFIQGSIDFIFGNARSLYEDCTINSIAEDIGVEISGSITAQGRQSEKEETGFSFVNCRIDGSGKVWLGRAWGAYATVVFSTTNMSDVVVAEGWNDWSNSTRDKSVFFGEYHCFGEGANYRARVSYGKQLKDYEAAPYMDVSYINGEDWLLNHTSRSYGSFVISNHSY 414
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere02g1079 414 SUPERFAMILY Pectin lyase-like 98 396 IPR011050 -
Dere02g1079 414 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 96 396 - -
Dere02g1079 414 FunFam Pectinesterase 96 401 - -
Dere02g1079 414 Pfam Pectinesterase 103 392 IPR000070 GO:0030599|GO:0042545
Dere02g1079 414 ProSitePatterns Pectinesterase signature 2. 250 259 IPR033131 -
Dere02g1079 414 Gene3D - 96 404 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere02g1079 Dere-ChrDere02 10312792 10314755 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere02g1079 94 396 Carbohydrate Esterase AT1G05310 52.288 3.67e-115 340