Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere02g1067 ATGGATCGTGAATGGGGTTCGAAGCCTGGAAGCGGAGGCGCCGCCTCCGCCCAGAATGAAGCCATCGACCGTCGTGAGCGTCTCCGTCGACTCGCCCTTGAGACTATTGATCTTGCCAAAGACCCCTACTTCATGCGCAATCATCTTGGCAGCTATGAGTGCAAACTTTGTCTCACTTTGCACAATAATGAAGGGAATTACTTGGCGCACACACAAGGTAAGCGGCATCAGACTAATTTGGCTAAGAGAGCAGCTCGCGAGGCCAAAGAAGCACCCGCTCAACCTCAGCCCCACAAGCGTAAAGTCTCGGTTCGCAAGACAGTGAAGATCGGTAGGCCTGGGTACCGAGTGACTAAGCAATATGATCCAGAGACAAAGCAGAGATCTCTACTATTCCAGATTGAATATCCTGAGATTGAAGACCTAACAAAGCCAAGGCATAGATTTATGTCTTCTTATGAGCAGAGGGTGCAACCCTTTGATAAAAGATATCAGTATCTTTTGTGCGCAGCTGAACCATACGAAATCATTGCTTTCAAGGTTCCCAGCACCGAGATTGATAAATCAACTCCAAAGTTTTTCTCACACTGGGACCCAGACTCAAAGATGTTCACGTTGCAATTGTATTTCAAATCCAAGCCACCAGAGGCAAACAAACCCCAGCCTCCCTCTACAGTCAATGGCACAACTGCACCTGGGGTTCCACCAAGGCCTTTGCCTCCACCACCCCAGGCTCCACCACCACCACCTCCTCCACCTCAAGGGTTACCATCTGGTGCACCTCTTGGAAATCCTCCTAGAGCCCCTCCACCTCCGATGCCTGGATCATTGCCGCCTCCGCCTCCTATGGCAAATGGCCCTCGTCCTGCACCTCCTGGTGGAATTCCTTCTATTCCACCCCCACCCCCTGTTGCCAGCAGCACAACAGCAAGTTTCAACATGGGTACTAGGCCTCCATCAATGCCACCTGGGCAAGGTTTTCCAGGACAACAAATGCAGGGCCAGGTTGCTCATCCACCACCACCACCACCTCCTCCTAGAATGGGGCATTAG 1053 0.5176 MDREWGSKPGSGGAASAQNEAIDRRERLRRLALETIDLAKDPYFMRNHLGSYECKLCLTLHNNEGNYLAHTQGKRHQTNLAKRAAREAKEAPAQPQPHKRKVSVRKTVKIGRPGYRVTKQYDPETKQRSLLFQIEYPEIEDLTKPRHRFMSSYEQRVQPFDKRYQYLLCAAEPYEIIAFKVPSTEIDKSTPKFFSHWDPDSKMFTLQLYFKSKPPEANKPQPPSTVNGTTAPGVPPRPLPPPPQAPPPPPPPPQGLPSGAPLGNPPRAPPPPMPGSLPPPPPMANGPRPAPPGGIPSIPPPPPVASSTTASFNMGTRPPSMPPGQGFPGQQMQGQVAHPPPPPPPPRMGH 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere02g1067 350 PANTHER SPLICING FACTOR 3A SUBUNIT 2 1 344 - -
Dere02g1067 350 SMART CactinC_cactus_3 89 217 - -
Dere02g1067 350 Pfam Zinc-finger of C2H2 type 52 76 - -
Dere02g1067 350 FunFam Splicing factor 3a subunit 2 94 218 - -
Dere02g1067 350 SMART ZnF_U1_5 49 83 IPR003604 GO:0003676|GO:0008270
Dere02g1067 350 Pfam Pre-mRNA-splicing factor SF3a complex subunit 2 (Prp11) 110 204 IPR031781 -
Dere02g1067 350 Gene3D Classic Zinc Finger 46 89 - -
Dere02g1067 350 MobiDBLite consensus disorder prediction 213 350 - -
Dere02g1067 350 ProSiteProfiles Zinc finger matrin-type profile. 52 82 IPR000690 GO:0003676|GO:0005634|GO:0008270
Dere02g1067 350 MobiDBLite consensus disorder prediction 233 306 - -
Dere02g1067 350 MobiDBLite consensus disorder prediction 1 21 - -
Dere02g1067 350 Gene3D - 93 218 - -
Dere02g1067 350 MobiDBLite consensus disorder prediction 335 350 - -
Dere02g1067 350 PRINTS Proline rich extensin signature 211 232 - -
Dere02g1067 350 PRINTS Proline rich extensin signature 253 270 - -
Dere02g1067 350 PRINTS Proline rich extensin signature 271 296 - -
Dere02g1067 350 PRINTS Proline rich extensin signature 236 252 - -
Dere02g1067 350 SUPERFAMILY beta-beta-alpha zinc fingers 48 83 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere02g1067 Dere-ChrDere02 10119424 10121932 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere02g1067 1 228 C2H2 Transcription Factor Family AT2G32600 88.596 1.34e-141 400