Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere02g1064 ATGGTGGTGTCCAGGGATCACGCCCAAATCATGAAGGGCAAGCGTACCAGGCGTCAAAGGCCACCCTCCCCACTAAGGCTAGCCATAGCCATGCCTTCAACTTCATCCTCCAGTGCAGGAAGAACCAGTACTGACGACTTTTCCGGTGGGTTTGATCCCGCAAACACGTCACCGCCGGCGCCCACGTCAGCCGAACTGAGGGATAGCACGAAGGAGGAAGAGGAGGACATGGCCAATTGTCTGATTCTTTTGGCTCAAGGGAAATCCTCAGACCCCGTAGCTGCTCCTAAGGATGGGGTATACCTTTACCAGTGCAAGACTTGTGAGCGATGTTTCCCTTCGTTCCAAGCGCTTGGTGGACACAGAGCCAGCCACAAGAAACTGAAGCCCAATCCAGAAGAAAAGCAAGTTGGTTATGACTGCACAAGTACCGCCCTCTCCTTGCAATTATCAAACAGAGCTTTGTTGTATTGTAGTAAATCCAAAGTTCATGAGTGTTCGGTGTGTGGGGCTGAGTTCTCTTCTGGTCAAGCCTTGGGGGGTCACATGAGAAGGCATAGAAATTTTGTGAACGCCTCTGCAGCAGCTACCAGCAGCCCAGAATCTCAAGACGCCAACAAACCCAGAAACGTGTTCAAGTTGGACTTGAATCTTCCCGCACCTGAAGATCATGACCATAGAGAATCCCAGTTTCCCTTTCACTCCAAAGACAGTGCTCTTGTCTTCTCTGCATCTCCTTTGGTGGACTGCCATTACTGA 759 0.5099 MVVSRDHAQIMKGKRTRRQRPPSPLRLAIAMPSTSSSSAGRTSTDDFSGGFDPANTSPPAPTSAELRDSTKEEEEDMANCLILLAQGKSSDPVAAPKDGVYLYQCKTCERCFPSFQALGGHRASHKKLKPNPEEKQVGYDCTSTALSLQLSNRALLYCSKSKVHECSVCGAEFSSGQALGGHMRRHRNFVNASAAATSSPESQDANKPRNVFKLDLNLPAPEDHDHRESQFPFHSKDSALVFSASPLVDCHY 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere02g1064 252 SMART c2h2final6 164 186 IPR013087 -
Dere02g1064 252 SMART c2h2final6 103 125 IPR013087 -
Dere02g1064 252 MobiDBLite consensus disorder prediction 29 64 - -
Dere02g1064 252 SUPERFAMILY beta-beta-alpha zinc fingers 102 186 IPR036236 -
Dere02g1064 252 ProSiteProfiles Zinc finger C2H2 type domain profile. 164 186 IPR013087 -
Dere02g1064 252 ProSiteProfiles Zinc finger C2H2 type domain profile. 103 130 IPR013087 -
Dere02g1064 252 Gene3D Classic Zinc Finger 102 186 - -
Dere02g1064 252 MobiDBLite consensus disorder prediction 1 71 - -
Dere02g1064 252 Pfam C2H2-type zinc finger 163 187 - -
Dere02g1064 252 Pfam C2H2-type zinc finger 103 127 - -
Dere02g1064 252 ProSitePatterns Zinc finger C2H2 type domain signature. 105 125 IPR013087 -
Dere02g1064 252 ProSitePatterns Zinc finger C2H2 type domain signature. 166 186 IPR013087 -
Dere02g1064 252 PANTHER ZINC FINGER PROTEIN ZAT5 36 238 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere02g1064 Dere-ChrDere02 10088060 10088818 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere02g1064 3 252 C2H2 Transcription Factor Family AT2G28200 40.476 6.45e-54 174
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Dere02g1064 zf-C2H2_6 8.1e-13 CL0361