Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere02g1047 ATGGGTAGAGCTCCTTGTTGCGACAAGGCAAATGTAAAGAAAGGACCATGGTCTCCTGAAGAAGATGCTAAGCTAAAGGAGTATATAGAGAAACATGGAACGGGGGGGAATTGGATTACTCTCCCACAAAAAGCTGGTTTGAGAAGATGTGGGAAAAGCTGTAGACTAAGATGGCTTAACTATCTCAGACCCAACATTAAGCATGGCGAGTTCTCTGATGATGAAGATAGAATCATCTGCACCCTCTTTGCTAACATTGGAAGCAGGTGGTCATTGATAGCAGCTCATTTACCTGGGAGGACTGACAACGATATCAAGAACCACTGGAACACCAAGCTTAAGAAGAAAATAATGGGCACGAATCCTTCGGCTCTGGGGAATAAGCCTCGCCAAGCTACCCTTTCAACCATACTTCAAAATTCCACACCATCTTCACCATTATCATTCTCAGACAGCATCAACTCTTACTATTATCATCCTCATGTGTTTTTCACCGGCTCTTTGAGTCATTTAAGTGGTAAGGCTTCTACTTCTGCGGCCACCTCCATTTTTCATACCCAAGATAGTAGTTTCATGGGACCCATTCGGAATCAGCAAGCGTCTAGTATGGTTGGGAGTGAGGCTGCTAGTTGCAGCTCTTCTGATGGGAGCTGCAATAACCAGATCATACATGCCAAAGAAGCAGAGTTTCTGTACGGTGGAGATGGAGCTTTAATCCGACAGATAAGTGGTGTGCATAATTCTCCCAACAGCGGGTTATGGGGAGAGAACCTATTAGATTATGGTATGGAAGACATTAAACAACTGATAAGCACTGATAATTGCAGCAACTTTTTGTCTGATGAAAACAAGACAGAGGAAAGGGTTGTGTACTACTGA 879 0.4369 MGRAPCCDKANVKKGPWSPEEDAKLKEYIEKHGTGGNWITLPQKAGLRRCGKSCRLRWLNYLRPNIKHGEFSDDEDRIICTLFANIGSRWSLIAAHLPGRTDNDIKNHWNTKLKKKIMGTNPSALGNKPRQATLSTILQNSTPSSPLSFSDSINSYYYHPHVFFTGSLSHLSGKASTSAATSIFHTQDSSFMGPIRNQQASSMVGSEAASCSSSDGSCNNQIIHAKEAEFLYGGDGALIRQISGVHNSPNSGLWGENLLDYGMEDIKQLISTDNCSNFLSDENKTEERVVYY 292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere02g1047 292 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 62 IPR017930 -
Dere02g1047 292 CDD SANT 16 62 IPR001005 -
Dere02g1047 292 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Dere02g1047 292 ProSiteProfiles Myb-like domain profile. 9 62 IPR001005 -
Dere02g1047 292 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Dere02g1047 292 Pfam Myb-like DNA-binding domain 69 111 IPR001005 -
Dere02g1047 292 Pfam Myb-like DNA-binding domain 14 62 IPR001005 -
Dere02g1047 292 Gene3D - 69 135 - -
Dere02g1047 292 SUPERFAMILY Homeodomain-like 11 109 IPR009057 -
Dere02g1047 292 PANTHER OS09G0431300 PROTEIN 1 221 - -
Dere02g1047 292 FunFam Transcription factor RAX3 7 68 - -
Dere02g1047 292 Gene3D - 7 68 - -
Dere02g1047 292 SMART sant 13 64 IPR001005 -
Dere02g1047 292 SMART sant 67 115 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere02g1047 Dere-ChrDere02 9932073 9933298 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere02g1047 1 168 MYB Transcription Factor Family AT5G23000 64.706 5.07e-75 231
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Dere02g1047 Myb_DNA-binding 1.4e-14 CL0123