LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Dere02g1028	ATGGAAATGAATTTAATGAAGAACAATGCCTCCTGGGTCGCTCTTGTTTTATTGTTCTCTTTAATTTCTTTAAGTCTGCTACCACGGGTTCAATGTGCTGACGGGGATAATACCAACCCTAGTGTGCTCCCAATAGTAACGCAAAAAATCTATGAACGACTTACAAATGTTACTACAGATTTAACCAGGGATATTAAGGATAATTTGGGCTTCTGCATAAAGGATGTGGATAGCGATTGGGATGGTGCATTTAATTTTACGGGAAAACTGGATTTCTTGACCGCTTGTATTAAACAGATAAAAGGAGATCTTACATTTCGAATATGTAGCACAGCTGAAATACGGTTCTTCTTCAATGTTTTCAAAGATACATCGGCTACTAAGTACCTAAAACCAAACAAGAATTGCAATTTGACCTCATGGGTGGAAGGTTGTGAACCTGGTTGGCATTGTAGTGTAGGCACAGATGTTGATCCCAAATATTTAAAGGAGTCAAAGGATATTCCTTTGAGAAACAAGGATTGTCAACCCTGTTGTGAAGGGTTTTTCTGCCCTCGGGGGTTGACTTGCATGATACCTTGTCCACTTGGCTCTTATTGTCCCCTTGGAAAACTGAACAAAACGAGTGGCTTATGTGAACCATATCATTACCAGATACCTGCTGGATTAACAAATCATACCTGTGGGAGCGCTGATATTTGGAGCAATGTTGTCAACAATAGTGACATCTTCTGTTCTCCAGGATCATACTGCCCAACCACCACAAGTAAAGTTTCCTGCAGTAAGGGACATTACTGCTGGATGGGTTCCTTGCTTCAAAAGCCATGCTTCAAGCTGAGTACCTGTAATCCAAATACAGCAAACCAAAATATTCATGCTTACGGGGCTTTGCTTCTTGCTGCATTAGGTGCTCTCCTGCTCATCATTTATAACTGCTCTGATCAAGTTCTGTCTACTCGAGAAAGAAGGCAGGCTAAAAAAAGGGAAGCTGCAGCAAAGCATGCAAGAGAAACTGTACAAGCTCGTGAAAGGTGGAAATCAGCAAGAGATGTGGCTAAGAAGGGAGCAGCGGGATTGCAAGAGTCGTTCTCCCGCACCTTTTCTCGCAGAAAATCTACAAAACCAGCATCAGGGTTCAAGATCTTTAGTTCGAAAACTAATATAGGTAACACCCCAGTGCCATCAATTCCTCCAGATTCTTCAAATGAGGCTTTAAAAGCTAAGAAGAAGGAACCTAGCAACCTCACCAAAATGATGGATTCCATTGAGAATGATCCGAATAGCCATCAAGGGTTTAGTCTGCATATTGGAAATAAACAACCTAAGAAGCAGACGGCAAAAGATTTACATACTAAGAGCCAAATTTTCAAGTATGCTTATGGTCAGATTGAAAAGGAGAAAGCTATGCAAGATGCAAACAACAACCTGACTTTCTCAGGAGTCATTTCAATGGCAACTGGAAATGAGGTTCGGAAAAGGCCTCCTATTGAGGTAGCTTTCAAAGACTTAACTCTAACTTTGAAAGGGAAAAACAAACATGTACTGAGATGCGTGTCAGGAAAATTCAGTCCTGGTCGAGTTTCAGCAGTCATGGGTCCCTCAGGAGCCGGGAAAACCACATTTCTTTCAGCTATTGCGGGAAAAGCAAGAGGTTGCTCCGTGACAGGTTCAATTTTAATCAATGGAAGGCATGAATCCATACACTGTTATAAGAAAATTATTGGTTTTGTGCCACAAGATGATATTGTGCATGGCAACTTGACAGTGGAGGAGAATCTTCGTTTCAGTGCAAGATGCAGACTGTCTGCGGACTTGCCAAAACCAGATAAGGTTCTGATTATTGAAAGAGTAATTGAATCCTTGGGCCTCCAAGCAGTGAGGGATTCCATAGTTGGAACAGTAGAGAAGCGAGGTATTTCTGGAGGGCAAAAGAAACGTGTAAACGTAGGGCTAGAGATGGTGATGGAGCCTTCTTTATTAATCTTAGATGAGCCTACGACTGGTCTAGACAGTGCATCTTCTAGTTTACTGCTTAAAGCACTCCGACGTGAAGCTCTCGAAGGGGTAAACATTTGCATGGTGCTTCACCAACCAAGCTATACTTTGTTCAGAATGTTCGATGACATTGTATTTCTAGCCAAAGGTGGCTTTACTGCATATCATGGTCCTGTTAAAAAAGTAGAAGAATATTTTGCTGGTATTGGAATCACCGTACCTGATCGTGTAAATCCCCCAGACCATTTCATTGACGTTCTGGAAGGCCTAGTAAAAACAAGTTCAGGTGTGACTCATCAACAGCTCCCTGTCAGATGGATGCTTCATAATGGTTATACAGTACCTCCAGATCTGCTTCATTTTGCTGATGAAATTGCTGCGTCTGCATCTGCATCTGCCTCAAGTTCAAGTGCTGCAACAAAGGGTAATGATGAAGATACTAATCAATCCTTTGCCAAAGAGTTTTGGCAGGATGTGAAGAGTACTGTTCACATAAGTCGAGATCATGTAGAGGAGAAATTTTCAAGGGTTAAGGATTTATCTGACCGTGTAACTCCTGGTGTTGCCCGGCAATATAGATACTTCCTAGGGAGGGTTGGTAAGCAGAGGTTACGAGATGCCCAATCGCAAGTAGTCGACTATATCATTTTATTAGTTGCTGGTGCTTTGTTAGGAACTCTTACTGAGGCCAATGATGAAACATTCGGACTCCTTGGCTATACTTATACCGTCATTGCTGTCTCTCTACTATGCAAGATTACAGCTCTCAGATCATTTTCTCTGGATAAATTAGAGTACTGGAGGGAGAGTGCTGCTGGGATCAGCACTCTGGCTCATTTTCTCTCCAAAGATACAATTGATCACTTCAATACAATCATCAAACCTGTGGTTTATCTGTCCATGTTCTTCTTTTTTAGCAATCCAAGGTCAAGCTTTGCAAGCAATTACATTGTTTTGCTCTGTCTTGTATATTGTGTGACTGGCATGGCTTATGCAATAGCCATTTACTTCCAGCCTGGTCCAGCACAACTGTGGGCAGTGCTTCTTCCTGTCGTTATGACTCTCATTGCAAACCAGCCAAGAGATACTCCATTTATGAAGATCCTAGTACAACTGTGCTACCCAAAATGGGCTTTAGAGGCCTTTGTCATCGCGAATGCTGAAAGGTACTCTGGGGTGTGGTTGATAACTCGTTGTAGTTCACTCATGGCCAATGGCTACAACGTCAACGATTGGGCTCTTTGTCTGGTTGTCCTCGTTATAAATGGTATACTTGCCCGAATTGTGGCCTTCATTTGTCTCCTCCTCTCCCGAAAGAAGTGA	3318	0.4222	MEMNLMKNNASWVALVLLFSLISLSLLPRVQCADGDNTNPSVLPIVTQKIYERLTNVTTDLTRDIKDNLGFCIKDVDSDWDGAFNFTGKLDFLTACIKQIKGDLTFRICSTAEIRFFFNVFKDTSATKYLKPNKNCNLTSWVEGCEPGWHCSVGTDVDPKYLKESKDIPLRNKDCQPCCEGFFCPRGLTCMIPCPLGSYCPLGKLNKTSGLCEPYHYQIPAGLTNHTCGSADIWSNVVNNSDIFCSPGSYCPTTTSKVSCSKGHYCWMGSLLQKPCFKLSTCNPNTANQNIHAYGALLLAALGALLLIIYNCSDQVLSTRERRQAKKREAAAKHARETVQARERWKSARDVAKKGAAGLQESFSRTFSRRKSTKPASGFKIFSSKTNIGNTPVPSIPPDSSNEALKAKKKEPSNLTKMMDSIENDPNSHQGFSLHIGNKQPKKQTAKDLHTKSQIFKYAYGQIEKEKAMQDANNNLTFSGVISMATGNEVRKRPPIEVAFKDLTLTLKGKNKHVLRCVSGKFSPGRVSAVMGPSGAGKTTFLSAIAGKARGCSVTGSILINGRHESIHCYKKIIGFVPQDDIVHGNLTVEENLRFSARCRLSADLPKPDKVLIIERVIESLGLQAVRDSIVGTVEKRGISGGQKKRVNVGLEMVMEPSLLILDEPTTGLDSASSSLLLKALRREALEGVNICMVLHQPSYTLFRMFDDIVFLAKGGFTAYHGPVKKVEEYFAGIGITVPDRVNPPDHFIDVLEGLVKTSSGVTHQQLPVRWMLHNGYTVPPDLLHFADEIAASASASASSSSAATKGNDEDTNQSFAKEFWQDVKSTVHISRDHVEEKFSRVKDLSDRVTPGVARQYRYFLGRVGKQRLRDAQSQVVDYIILLVAGALLGTLTEANDETFGLLGYTYTVIAVSLLCKITALRSFSLDKLEYWRESAAGISTLAHFLSKDTIDHFNTIIKPVVYLSMFFFFSNPRSSFASNYIVLLCLVYCVTGMAYAIAIYFQPGPAQLWAVLLPVVMTLIANQPRDTPFMKILVQLCYPKWALEAFVIANAERYSGVWLITRCSSLMANGYNVNDWALCLVVLVINGILARIVAFICLLLSRKK	1105

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Dere02g1028	1105	Pfam	ABC-2 type transporter	696	1105	IPR043926	GO:0140359
	Dere02g1028	1105	Pfam	ABC transporter	517	666	IPR003439	GO:0005524
	Dere02g1028	1105	PANTHER	ABC TRANSPORTER G FAMILY MEMBER 28	249	1093	-	-
	Dere02g1028	1105	CDD	ABCG_EPDR	495	722	-	-
	Dere02g1028	1105	ProSiteProfiles	ATP-binding cassette, ABC transporter-type domain profile.	498	739	IPR003439	GO:0005524
	Dere02g1028	1105	ProSitePatterns	ABC transporters family signature.	639	653	IPR017871	GO:0005524\|GO:0016887
	Dere02g1028	1105	SMART	AAA_5	524	716	IPR003593	GO:0016887
	Dere02g1028	1105	Gene3D	-	488	734	IPR027417	-
	Dere02g1028	1105	MobiDBLite	consensus disorder prediction	327	349	-	-
	Dere02g1028	1105	MobiDBLite	consensus disorder prediction	389	412	-	-
	Dere02g1028	1105	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	495	721	IPR027417	-
	Dere02g1028	1105	FunFam	ABC transporter G family member 24	492	734	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Dere02g1028	Dere-ChrDere02	9709722	9717646	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Dere02g1028	525	715	Calmodulin-binding Proteins	AT2G36910	29.648	6.92e-10	61.6