Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere02g1016 ATGTCTACCTCTGCGACTTCCGTAGCTCTTCCTACCTTCACTTCCAAATCCTCTTCACTAGGCTGTGTGAGACAATCGTTTTTCTCTTCCCATTCTTTATCTTCCGTGTCTCTCAGACTTAAATCGAAGCCCATTTCTTTGTCTACCTCTTTTCTTGGATTAGACACACTTTGTCCTTCTTTGTCGTCTCGTTTTATCTGGAATGCTGCTCTTTCGTCTGAGTTCGACCACGAAGAGATTGTGAGTCATCGGGATGAGCCTAGCTACTCCCCCGACTCAAACTCTTTGTGGGTAATCTTCCTTTCAGCGTTGACAGTAATTTATGATAAAATGACCGGAAGAAGCAGGGGATTTAGTTTTGTGACCTTGTCTACCTCTGTGGAAATACATTTTGACAATATTCAAGAACTAGATGGAAGGGCGTTGAGAGTAAATTTTGGACCTCCTCCTCTTTGCAAGGAGAATTCCCCTTTTAGAGGTGCAAGAGGTGGTTCTGCTTCAGATACTAGAAACCGTGTTCATGTAGGTAATCTTGCATGGGGTGTTGATAACTTGGCGCTTGAGACATTGTTTGGTGAGCAAGGAAAGGTTTTGGAAGCAAAGGTAATTTATGACAGGGAAAGTGGAAGATCAAGAGGATTTGGATTTGTGACTTACAGCAATGCTGAAGAGGTCAACAATGCTATTGAGTCGTTAAAGGTAGATGTGATTGGAATTTTAGATAAGCAGCAGTATTTGCAATGGTTGACTTGA 753 0.4223 MSTSATSVALPTFTSKSSSLGCVRQSFFSSHSLSSVSLRLKSKPISLSTSFLGLDTLCPSLSSRFIWNAALSSEFDHEEIVSHRDEPSYSPDSNSLWVIFLSALTVIYDKMTGRSRGFSFVTLSTSVEIHFDNIQELDGRALRVNFGPPPLCKENSPFRGARGGSASDTRNRVHVGNLAWGVDNLALETLFGEQGKVLEAKVIYDRESGRSRGFGFVTYSNAEEVNNAIESLKVDVIGILDKQQYLQWLT 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere02g1016 250 Gene3D - 153 243 IPR012677 -
Dere02g1016 250 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 171 250 IPR000504 GO:0003723
Dere02g1016 250 PANTHER OS02G0815200 PROTEIN 106 232 - -
Dere02g1016 250 SMART rrm1_1 172 240 IPR000504 GO:0003723
Dere02g1016 250 SUPERFAMILY RNA-binding domain, RBD 168 232 IPR035979 GO:0003676
Dere02g1016 250 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 174 233 IPR000504 GO:0003723
Dere02g1016 250 SUPERFAMILY RNA-binding domain, RBD 104 169 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere02g1016 Dere-ChrDere02 9588339 9589704 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere02g1016 112 232 Eukaryotic Initiation Factors Gene Family AT4G34110 36.220 5.61e-11 60.5