Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere02g1015 ATGGAGGGTGAGATGAGGCAGTCAAGGTTTAAGAGGATTTGCGTGTTCTGTGGGAGCAGCCAGGGCAAGAAGAGTAGCTATCAAGATGCTGCAATTGAGCTTGGCAAGGAATTGGTCTCAAGGAACATCGATTTGGTGTATGGAGGGGGAAGCATTGGTCTGATGGGTTTAGTTTCACAAGCAGTTCATGATGGCGGTCGGCATGTCATTGGAGTTATTCCCAAGACGCTCATGCCTCGAGAGCTCACTGGCGAAACAGTGGGAGAAGTGAAGGCAGTAGCAGATATGCACCAAAGGAAAGCAGAGATGGCTAGGCATTCAGATGCCTTTATTGCCTTACCAGGGGGTTATGGGACTCTTGAGGAACTTCTTGAAGTCATAACCTGGGCTCAGCTTGGGATTCATGACAAACCGGTGGGATTACTCAATGTTGATGGATACTACAACTCCTTGCTGTCGTTTGTCGATAAAGCCGTAGAAGAGGGATTCATTAATCCAAAGGCCCGCCACATAATTGTTTCTGCACCGACACCCAAAGAGTTAGTGAAGCAATTGGAGGAATACGTTCCCTGTCACGAAAGTGTTGCTTCCAAGTTGAGTTGGCAGATGGAACAGCTGGGTTATCCTCAAGAGTATGATTTGTCAAGGCTCAAGAATTCAAGGAAACACCTTATCTCTCGTCAAACTCTCACTTCATTTAGATACAATCCTTCAGAACTCACAAGCTCTTCATCTCACAGCAAAGGAAACCCAAAGCAAACAGAAAAAACCAAGAAATTGAAGAGGCTAGGGCCAAGAGCTAGTGTTAGCAAAATGAACCAACATCTGTATTGTTCAGCTGGAGCCTCAAGACATACAGATAAGAGGCTTTTGGAGTCGGAAAGAATTGTTTCGTCACTCGCTGCAAAATTGGGAATCAGAGCAATCGTGAGCATCCACTTGGTATTATGTTGCTCAGTGGAAGATCTTTCCCTGAGTGATTTGCTGTCACTTTGGGAAATTTCTCTTATTCTTCGTGGACAAGTGGCACAGATCCTGAATCCAGCTCTGCTGTGGTCCTCTATGCTTTTTCAGTACTCTTGGAACTGCTATACTCTTCGAACAGAGATGTTTACATTTATGGATTCAAAGGAGAAGTTGAAAGAGGAGGACAAATGCCTGGATCCTCGGCTATGGCATGCCTGCGCCGGCGGTATGGTGCAACTGCCACCGGTGAACGCTAAGGTATTTTACTTCCCGCAAGGTCACGCTGAACATGCATGTGGACCTGTGGACTTCAAGAATTGCCCGAGGCTTCCACCTTACATTCTTTGCAGAGTCGCCTCTCTTAAATACATGGCTGATCAGGAGACAGATGAGGTATATGCGAAACTCAGGCTTGTTCCTCTGAATGGGAAGGAGGCTGATTATGACGATGATGGCGCTGGAAACATCAATGGATCTGAAGCTCAAGAGAAACTCGCTTCATTTGTAAAAACCTTGACGCAATCGGACGCCAACAATGGTGGTGGGTTTTCTGTTCCCAGATACTGTGCAGAGACAATCTTTCCTCGTTTGGACTTTTCAGCAGATCCTCCTCTTCAATATATCTTGGCTAAAGATGTTCACGGGGAATCATGGAAATTCAAGCACATTTATAGAGGCACACCCAGGCGGCATCTTTTGACGACCGGGTGGAGTCCTTTTGTGAATAAGAAGAAGCTTGTTGCTGGGGATTCAGTAGTGTTTTTAAGAGGAGAAATTGGAGATCTCTTTGTGGGGATTCGACGAGTTAGAAGAGGAAATATTGTTCGATTTGAGTCTTCATCAGTATTGAATTCAGAGGGCGGAAATTGTTCTCTACCTTATGGACGATTATCAGCCTTCTTGAGGGAGGATGATAGGAAAATACTGATGAATAATGTTACTGGCAATGGAGTGATGAACTCAAGTGGGAGTGTGATGGGCAGCGGGAAAGTGAGAGCCAAAGCCGTTATTGAAGCAGCGACTCTAGCTGCCAATGGCCAACCATTTGAGGTTGTCTACTATCCTCGGGCAGGCACTCCAGAATTCTGTGTGAAGGCCTCCTTAATAAAAACTGCTCTTCAAATTAGGTGGGGTTCTGGACTGAGGTTCAAGATGGCCATTGAGACAGAGGATTCGTCGCGGATAAGTTGGTTTATGGGAACTATATCTTCAGTGCAGGTTGCTGATCCCCTACTCTGGCCTGATTCACCTTGGAGGCTTCTCCAGGTTACATGGGATGAACCAGATTTACATAAAAATGTGAAACGGGTGAGCCCATGGATGGTTGAATTGGTATCAAACATGCCTGCAATCCCTCCTCCTTTCTCACCACCGCGCAAGAAATTGAGATTGTCTCAACATCCAGATTTTCCACTTGATCCCCAACTCTATGTGCCAACATGTGCTAGTAACCTCTTAGGTCCTCCCAACAACCCTTTTGGTTATCATATACCTGAAACTACTCCTGCTGGCATGCAGGGAGCCAGGCATGGTTATTATGGTCTATCCTTAGCAGATCTCCACCACCATAAATTGCAGTTAGAACTACTTCGGACGGGCTTCCCACCTCTTGACCATGCTTCTATGCAAACGAGGGTCTCTAATAACCCAACAATGCAAAATCCTAGCATGAGTGAGAATGTCTCCTGCTTACTATCCAAGGAAAATTCTGCCCAGTCTTTGAATAAACAGGATGATCTCACGACACCCCACCTTGTGCTTTTTGGCAAAAAAATTCTGACTGGGAAGCAGATCTAA 2763 0.4575 MEGEMRQSRFKRICVFCGSSQGKKSSYQDAAIELGKELVSRNIDLVYGGGSIGLMGLVSQAVHDGGRHVIGVIPKTLMPRELTGETVGEVKAVADMHQRKAEMARHSDAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLSFVDKAVEEGFINPKARHIIVSAPTPKELVKQLEEYVPCHESVASKLSWQMEQLGYPQEYDLSRLKNSRKHLISRQTLTSFRYNPSELTSSSSHSKGNPKQTEKTKKLKRLGPRASVSKMNQHLYCSAGASRHTDKRLLESERIVSSLAAKLGIRAIVSIHLVLCCSVEDLSLSDLLSLWEISLILRGQVAQILNPALLWSSMLFQYSWNCYTLRTEMFTFMDSKEKLKEEDKCLDPRLWHACAGGMVQLPPVNAKVFYFPQGHAEHACGPVDFKNCPRLPPYILCRVASLKYMADQETDEVYAKLRLVPLNGKEADYDDDGAGNINGSEAQEKLASFVKTLTQSDANNGGGFSVPRYCAETIFPRLDFSADPPLQYILAKDVHGESWKFKHIYRGTPRRHLLTTGWSPFVNKKKLVAGDSVVFLRGEIGDLFVGIRRVRRGNIVRFESSSVLNSEGGNCSLPYGRLSAFLREDDRKILMNNVTGNGVMNSSGSVMGSGKVRAKAVIEAATLAANGQPFEVVYYPRAGTPEFCVKASLIKTALQIRWGSGLRFKMAIETEDSSRISWFMGTISSVQVADPLLWPDSPWRLLQVTWDEPDLHKNVKRVSPWMVELVSNMPAIPPPFSPPRKKLRLSQHPDFPLDPQLYVPTCASNLLGPPNNPFGYHIPETTPAGMQGARHGYYGLSLADLHHHKLQLELLRTGFPPLDHASMQTRVSNNPTMQNPSMSENVSCLLSKENSAQSLNKQDDLTTPHLVLFGKKILTGKQI 920
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere02g1015 920 Gene3D - 699 772 - -
Dere02g1015 920 FunFam Auxin response factor 699 772 - -
Dere02g1015 920 Pfam B3 DNA binding domain 490 590 IPR003340 GO:0003677
Dere02g1015 920 FunFam Auxin response factor 488 592 - -
Dere02g1015 920 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 384 914 IPR044835 GO:0003677|GO:0006355|GO:0009725
Dere02g1015 920 ProSiteProfiles B3 DNA-binding domain profile. 490 592 IPR003340 GO:0003677
Dere02g1015 920 CDD B3_DNA 489 590 IPR003340 GO:0003677
Dere02g1015 920 FunFam CASP-like protein 1 187 - -
Dere02g1015 920 Gene3D - 487 591 IPR015300 -
Dere02g1015 920 MobiDBLite consensus disorder prediction 237 264 - -
Dere02g1015 920 Pfam Possible lysine decarboxylase 55 185 IPR031100 -
Dere02g1015 920 NCBIfam Rossman fold protein, TIGR00730 family 11 188 IPR005269 GO:0009691|GO:0016787
Dere02g1015 920 Gene3D - 2 187 - -
Dere02g1015 920 Pfam Auxin response factor 661 744 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Dere02g1015 920 SMART B3_2 490 592 IPR003340 GO:0003677
Dere02g1015 920 SUPERFAMILY DNA-binding pseudobarrel domain 483 593 IPR015300 -
Dere02g1015 920 SUPERFAMILY MCP/YpsA-like 9 188 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere02g1015 Dere-ChrDere02 9555100 9566607 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere02g1015 384 920 B3 DNA Binding Superfamily AT4G30080 56.410 0.0 565
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Dere02g1015 Lysine_decarbox 1.6e-45 CL0349