Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere02g1009 ATGCACTGTCTATTCTTTTGTGAACATTCCTCGCCGATTTTATTCTGCTCTAAGTGTTGCACCTCTCTTTTTGCATTACTAAAGCCTATTCGGGGTTGTAGGAGCTGTATCGTGTCCGTCCAAGAAAGCTCTGTTCCAAACCCATCCACGACCCTCAGTCGGACCATGCAACTCCTCTATGCGCATGGCTTTCGTGAGATTTCTCTATCCTCTGTACTTCTCCAGCTTCTACTTTTCCTTTGCTCATCTTGCGCATATGGGTTTGGGACGATGGGACCAATATCGGCTTCGTATGGTAAAGATGAATTCTTTTGCGCCATCGATGCAAGCGGGAAGCAGGATGTCATTTGCTGGGGGAAGAACATCACTTCATCGGTTCCACCGTCGTCTTCGGCTTCAGCCTCTACCACTGACACTCCACCTATGGCAGCTCTGTCTGGTGGCGAAGGGTTTATGTGTGGCATTCTTGCAAGCACTTCGCAAGCATACTGCTGGAGCGCCACAAAACCAGCAATCGCTCTCGTGCCTCCCGCATACCAATCCACTGCATATTCCCATATTGCATCTGGGAAGGATCATGTTTGTGCTATTAGAGGATTCTATTATTCTAACGAAGGTTCAGGAACTGTTGACTGTTGGGAAATTGTGAGAACTGTGGACAACAGATTATCATCGAAACAGAGCGATTTGTACTATGATCAGTCAACTAGCAGTCTTGCATTAAACAAAATTGTATCTGGTGAGGGATTCTCTTGTGGTGCGGTCAGAGATGGAGGACTTGTCTGTTGGGGACCTACATCCGCGAGCTTAGGGGTTTCGAATGTATCAGAGAACTTCGCAGTGTTAATTTCAGGAAGGAGTTCAATTTGTGGGCTTTTGAACGTTTCTGGAGATTTGAAATGTTGGGGCGACGCAGATTCATTTGTTGATCCACCTACTGAGGTTGAACTAATCTCTCTGTCGGCTGGGGCTCACCATTTTTGTGGCATTCGAGCTGATAATCATATAGTGGAGTGTTGGGGGAGTTTCAATTCGTCTGTGGTTCCAAAAGGCTCCGGATTTATGGCAATTGCTTCTTCAGATTATACAACTTGTGGCGTCAGAGAGGACGATCTTCTACTTGATTGCTGGTTAGTGAATGCGTCCACGTCTGAGTTTGATCCTCCATTGGAGTTATCAAGTCCGGGTCTTTGCAGTGCCAGTTCTTGTAGTCAAGGTGAGTTTGCTTTCAATGTTAGTATTCTGAATGAGCCTGGTTTAACAAGCCTCTGCGTTCGAAAAGACTTGAAGATTTGTTCACCCTGTGGCTCAAATTGTTCTGAAGGCTTTTTCTTGTCTAGTCCATGCACTGAGAATGCCGATAGGGTATGTACTGCTTGTTCTCTTTGCCAAAATAGCTCTTGCTGGGATGTTTGTCGACTTCGATCATCTCCAGAGATTGTCCATAAGAAGCGTTGGCATCATTTGCGTCGATTAGTGATCATAATTGGGTCCTCTGCTTTGTGTTTCTTATTTATATTAGCTTGTGGATGTATTTTCCCATGTTTGATTAATAAGAAAGAATCCAAATCTTGCAAAGGCAAACCAGAGCAGCAAGTTGATATTAATGCTGATCTTCACTCTTTCCCTTCTACAACTTCCTGTCCTGGGATGCCTCAGATTTTCCGACTGTCAGAGCTAAAGGATGCCACTAATGGGTTCAAGGAGTTTAATGAGCTTGGTAGGGGAAGTTATGGTTTTGTCTACAAAGCTGTATTAGCAGATGGGAGGGTAGTTGCTGTGAAGAGAGCGAATGCTGCCACAATAATCCACACTAACAATCGTGACTTTGAAATGGAGTTGGAAATCCTCTGCAAAATCCGTCACTGTAATATTGTAAACTTGCTGGGTTACTGCGCAGAGATGGGGGAGAGGTTGCTTGTTTACGAGTATATGCCACATGGCACACTTTATGACCACCTTCATGGAGGCCTCTCGCCTCTGAATTGGAGCCTCAGGCTAAAGATATCAATGCAGGCTGCAAAGGGTCTTGAGTATCTTCACAAGGAACTAGTGCCACCAATTGTGCATAAGTATCTCAAGAGTCCAAACATTCTCTTGGATTCAGACTGGGGAGCGAGAATTGCAGATTTCGGACTCCTCACTTCGAGCGACAAGGATATACATGGGGAAGTGCAAAGGGATGTATACAACTTCGGGATTGTATTGCTTGAAATTCTCAGTGGAAGGAAAGCTTATGACATAGATTTCGCGCCTCCCAACATAGTTGAGTGGGCAGTGCCTTTTATCAAACAGGGGAAGGCTGCTGCTATAATTGATCGCAATGTGGCTCTTCCAAGGAACGTTGAGCCTTTGCTTATGCTAGCTGACATAGCAGAGCTGGCTCTTAGACAGAATCCAAGCGAGCGTCCAGCTATGTCGGATCTAGCATCTTGGCTGGAGCAAATTGTGAAGGACGGATTGATCTTTTAG 2472 0.4527 MHCLFFCEHSSPILFCSKCCTSLFALLKPIRGCRSCIVSVQESSVPNPSTTLSRTMQLLYAHGFREISLSSVLLQLLLFLCSSCAYGFGTMGPISASYGKDEFFCAIDASGKQDVICWGKNITSSVPPSSSASASTTDTPPMAALSGGEGFMCGILASTSQAYCWSATKPAIALVPPAYQSTAYSHIASGKDHVCAIRGFYYSNEGSGTVDCWEIVRTVDNRLSSKQSDLYYDQSTSSLALNKIVSGEGFSCGAVRDGGLVCWGPTSASLGVSNVSENFAVLISGRSSICGLLNVSGDLKCWGDADSFVDPPTEVELISLSAGAHHFCGIRADNHIVECWGSFNSSVVPKGSGFMAIASSDYTTCGVREDDLLLDCWLVNASTSEFDPPLELSSPGLCSASSCSQGEFAFNVSILNEPGLTSLCVRKDLKICSPCGSNCSEGFFLSSPCTENADRVCTACSLCQNSSCWDVCRLRSSPEIVHKKRWHHLRRLVIIIGSSALCFLFILACGCIFPCLINKKESKSCKGKPEQQVDINADLHSFPSTTSCPGMPQIFRLSELKDATNGFKEFNELGRGSYGFVYKAVLADGRVVAVKRANAATIIHTNNRDFEMELEILCKIRHCNIVNLLGYCAEMGERLLVYEYMPHGTLYDHLHGGLSPLNWSLRLKISMQAAKGLEYLHKELVPPIVHKYLKSPNILLDSDWGARIADFGLLTSSDKDIHGEVQRDVYNFGIVLLEILSGRKAYDIDFAPPNIVEWAVPFIKQGKAAAIIDRNVALPRNVEPLLMLADIAELALRQNPSERPAMSDLASWLEQIVKDGLIF 823
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere02g1009 823 FunFam Serine/threonine-protein kinase-like protein CCR1 722 820 - -
Dere02g1009 823 FunFam serine/threonine-protein kinase-like protein CCR1 536 644 - -
Dere02g1009 823 Pfam Protein tyrosine and serine/threonine kinase 571 718 IPR001245 GO:0004672|GO:0006468
Dere02g1009 823 Gene3D Transferase(Phosphotransferase) domain 1 645 724 - -
Dere02g1009 823 Gene3D Transferase(Phosphotransferase) domain 1 725 820 - -
Dere02g1009 823 ProSiteProfiles TNFR/NGFR family cysteine-rich region domain profile. 402 457 IPR001368 GO:0005515
Dere02g1009 823 Gene3D Phosphorylase Kinase; domain 1 535 644 - -
Dere02g1009 823 Gene3D - 238 407 IPR009091 -
Dere02g1009 823 Gene3D - 87 237 IPR009091 -
Dere02g1009 823 SUPERFAMILY RCC1/BLIP-II 93 345 IPR009091 -
Dere02g1009 823 ProSitePatterns Protein kinases ATP-binding region signature. 573 595 IPR017441 GO:0005524
Dere02g1009 823 PANTHER SERINE/THREONINE-PROTEIN KINASE-LIKE PROTEIN ACR4 69 817 - -
Dere02g1009 823 ProSiteProfiles Protein kinase domain profile. 567 813 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere02g1009 823 SUPERFAMILY Protein kinase-like (PK-like) 541 814 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere02g1009 Dere-ChrDere02 9476144 9481493 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere02g1009 72 815 Receptor kinase-like Gene Family AT3G59420 31.773 1.65e-110 357
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Dere02g1009 PK_Tyr_Ser-Thr 1.1e-29 CL0016