Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere02g1005 ATGGGTAACATTGGAAGTAGCGGCGTTAACAACAACCGCCGTAGACACAGTGGCAGTGGCAGAAGGAGTCATCCGCCGCCGCCTCCACCGGTGACGCCGCAGCCTGAAATCACGGCCAATCGATTCGTCTATGCAGCCGCTACCCCCTACCCATCACAATTCTCAAACTCGAATCCTCCACCGTATTACCAGTACCCGGGTTACTATCCCCCGCCTCCTCCAAATATGCCTGTGCCTCTGCCAGCTCCATACGATCAACATCATCGTATGGGGTCTCATCCTCCCATGGACCCAGCATGGATTGGCGGACGTTACCCTTGTGGCCCAGTTATGCCTCCCCCTCCACCCTATGTGGAGCATCAGAAGGCGGTTACGATAAGGAACGATGTTAATATTAAGAAGGAGACTCTAAGGATTGAGCCCGATGAGGAAAACCCGGGGTGTTTCCTTGTGGCATTCACATTTGATGCCACTGTTGCTGGGAGCATCGCCATACTTTTCTTTGCAAAAGAAGGTGATGGCTGCACCCTTACGCCAATGAAGGAAAATATTTTGGCACCTGTAACCATACACTTCCAGCAAGGTCTTGGCCAGAAGTTTAGACAGCCAGTTGGAACTGGTATTGACTTTTCAATATTTGAGGAATCAGAATTATTGAGAGTAGGTGACATGGATGTCTACCCGTTAGCAGTGAAGGCAGATGCATCCTCTTGTCTTGAAGGATCAGATGAAACTGCTGCATCTGGTAGCTCAAACTCTCAGATAACTCAAGCAGTGTTTGAGAAAGATAAAGGAGAGTTTCGGGTGAAGGTAATTAAGCAAATCTTGTGGGTGAATGGAATGAGGTACGAGTTGCAGGAGATATATGGCATTGGAAATTCAGTGGAGAGTGACTTGGACGGAAATGACCCAGGAAAAGAGTGTGTCATTTGCTTGTCGGAGCCTCGGGACACAACTGTCCTTCCCTGCCGACACATGTGCATGTGTAGCGGATGTGCAAAGGTTTTGAGGTTCCAGACAAACAGATGCCCCATATGTAGACAACCAGTGGAGAGGCTTTTGGAGATAAAGGTCAGCAACGGGCCTGAGGAATGA 1095 0.4932 MGNIGSSGVNNNRRRHSGSGRRSHPPPPPPVTPQPEITANRFVYAAATPYPSQFSNSNPPPYYQYPGYYPPPPPNMPVPLPAPYDQHHRMGSHPPMDPAWIGGRYPCGPVMPPPPPYVEHQKAVTIRNDVNIKKETLRIEPDEENPGCFLVAFTFDATVAGSIAILFFAKEGDGCTLTPMKENILAPVTIHFQQGLGQKFRQPVGTGIDFSIFEESELLRVGDMDVYPLAVKADASSCLEGSDETAASGSSNSQITQAVFEKDKGEFRVKVIKQILWVNGMRYELQEIYGIGNSVESDLDGNDPGKECVICLSEPRDTTVLPCRHMCMCSGCAKVLRFQTNRCPICRQPVERLLEIKVSNGPEE 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere02g1005 364 FunFam probable E3 ubiquitin-protein ligase LOG2 292 357 - -
Dere02g1005 364 PANTHER MAHOGUNIN 1 358 IPR045194 GO:0061630
Dere02g1005 364 MobiDBLite consensus disorder prediction 1 38 - -
Dere02g1005 364 SUPERFAMILY RING/U-box 307 353 - -
Dere02g1005 364 ProSiteProfiles Zinc finger RING-type profile. 308 347 IPR001841 -
Dere02g1005 364 SMART ring_2 308 346 IPR001841 -
Dere02g1005 364 Pfam Zinc finger, C3HC4 type (RING finger) 306 352 - -
Dere02g1005 364 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 292 357 IPR013083 -
Dere02g1005 364 CDD mRING-HC-C3HC5_MGRN1-like 306 347 IPR045195 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere02g1005 Dere-ChrDere02 9454784 9457636 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere02g1005 103 327 C3H Transcription Factor Family AT3G09770 66.234 5.16e-105 310