Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere02g0996 ATGTCTGGTGACCCTTTTTCCTTATCTGCTTCGATTGGAGGGTTTGCTCCGCAACAAAACCCAAACCCTAACCCTAAACCTAATCCCAAGAAGAAGAGAAATCTGCCAGGAACACCAGATCCAGATGCGGAGGTCATTGCGCTGTCACCGAAAACTCTCATGGCAACCAACAGGTTCGTATGTGAAATATGCAACAAAGGGTTTCAGAGAGATCAGAACCTTCAGCTTCACCGAAGGGGTCACAACCTGCCATGGAAGCTACGACAAAGGTCCAACAAAGAGGTACGAAAGAAGGTGTACATATGCCCGGAGAAGACATGCGTCCACCATGACCCGTCCAGAGCACTGGGAGACCTCACTGGGATAAAGAAGCATTTTAGCAGAAAACATGGGGAGAAGAAATGGAAGTGTGACAAGTGTTCCAAGAAATACGCAGTCCAGTCGGACTGGAAAGCTCACACCAAGACCTGTGGAACTAGAGAATATAAGTGCGATTGTGGTAACCTATTCTCCAGAAAGGACAGCTTCATAACACATAGAGCTTTCTGCGATGCCTTAGCGGAAGAGAGTGCGAGACTCACCTCGGTTAATACTACAAATCTGAATTTTAGGAACGAAGGGAATGTGATGAGCTCACAACCTAGTTTGGGACTTGAAAATAATGTGGAGGTAATTTCGCAATTCGGGTCGCATGGGTTCCGTGCCGATTTTAATGGAATGGGGATAGGTGGAAACTCAGTGAGTGCCGACCACCAAAGGGCGAGCTTGTCAATGTGGTTGAACCAGGGAAACAACAGTCTTGATGTTGGAGGGCTTTACGTCTCATCAAGTTGTTCTTCAGGTTTAGGTAATCATATGATACAAATGGCCCAAGCTAATAGTAATGTTTTTGGGTCTTGTAATTTTGGAATGCCTGCTTCGAATTCAACAAACGCAAGCCTTTCTCTGTCTAGTGGAAAAAAGGGAGAAGCTATTTCAAAGCCAGCTTCCCCCATGTCAGCTACTGCTCTTCTTCAGAAGGCAGCTCAGATGGGTTCCACCAGAAGCAGTAACAATAATCCCTCCATTTTCAGCGGCACTTTTGGATTGATGACCTCGTCTTCTTCCCACACTACTACTAATCTCAATGACAACAACCCCAACCAACCCCAGAATTTTAGTTCAACTAGCAGTGCTGAAGCTATGTTGGCAGCTACTGATAGTAACTTTAGCTCATTCACGCATACATCGAACACTAGTCTTGAACAACTTGTGATGCAAACCAAAGGAAAGCAAAGTGAGCAACAAGTGCAATTGAAGCTGTACCCTACTGGTTCAGAACATAATTTAACGAGAGATTTTCTCGGCGTGGGTGGTGCTGCAGGAGGAGCTTGCCCTCCTCCGTTTCTACCCCAAGAGCTCGCAAAGTTTGCTTCCATTGGCTCACCCTTGGGTTTGACCCAATTCACTGCCAATCATTGA 1461 0.46 MSGDPFSLSASIGGFAPQQNPNPNPKPNPKKKRNLPGTPDPDAEVIALSPKTLMATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLRQRSNKEVRKKVYICPEKTCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCDKCSKKYAVQSDWKAHTKTCGTREYKCDCGNLFSRKDSFITHRAFCDALAEESARLTSVNTTNLNFRNEGNVMSSQPSLGLENNVEVISQFGSHGFRADFNGMGIGGNSVSADHQRASLSMWLNQGNNSLDVGGLYVSSSCSSGLGNHMIQMAQANSNVFGSCNFGMPASNSTNASLSLSSGKKGEAISKPASPMSATALLQKAAQMGSTRSSNNNPSIFSGTFGLMTSSSSHTTTNLNDNNPNQPQNFSSTSSAEAMLAATDSNFSSFTHTSNTSLEQLVMQTKGKQSEQQVQLKLYPTGSEHNLTRDFLGVGGAAGGACPPPFLPQELAKFASIGSPLGLTQFTANH 486
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere02g0996 486 SUPERFAMILY beta-beta-alpha zinc fingers 58 155 IPR036236 -
Dere02g0996 486 MobiDBLite consensus disorder prediction 1 42 - -
Dere02g0996 486 ProSitePatterns Zinc finger C2H2 type domain signature. 61 81 IPR013087 -
Dere02g0996 486 Gene3D Classic Zinc Finger 55 82 - -
Dere02g0996 486 SMART c2h2final6 100 130 IPR013087 -
Dere02g0996 486 SMART c2h2final6 59 81 IPR013087 -
Dere02g0996 486 SMART c2h2final6 135 155 IPR013087 -
Dere02g0996 486 Gene3D Classic Zinc Finger 92 183 - -
Dere02g0996 486 ProSiteProfiles Zinc finger C2H2 type domain profile. 59 81 IPR013087 -
Dere02g0996 486 FunFam protein indeterminate-domain 12-like 38 106 - -
Dere02g0996 486 FunFam protein indeterminate-domain 5, chloroplastic-like 113 192 - -
Dere02g0996 486 MobiDBLite consensus disorder prediction 1 19 - -
Dere02g0996 486 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 19 457 IPR031140 -
Dere02g0996 486 MobiDBLite consensus disorder prediction 367 389 - -
Dere02g0996 486 Pfam Zinc finger, C2H2 type 59 81 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere02g0996 Dere-ChrDere02 9399408 9401198 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere02g0996 1 474 IDZ Gene Family AT5G03150 48.859 5.97e-135 397
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Dere02g0996 zf-C2H2 0.0049 CL0361