Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere02g0979 ATGGCTAATGACTCCTCGTTTTTGTTCTCCGGCATTCGCTTTGATAGAAAGAGGTTCGGCAGTGATATGACTAAGTTCGAGAAGAAAAAAGAAAGCGATCAGTCCGTGAATATTTCGAGCTCGGTTGATATTGAGAACGCAGGACCCGAAGAAGGAAAAGCATCTGCGAAGAAGAGGAAGCGGAAGGGAGCGGCTTCAGAAAAGGCAGATGGATTCAGTGTCTTTAGAAAATCAAAATCAGCCGAACATCGACAAAAAGATGAAGATAAAGCTGTGGTTGAGTCCGTCCCGCAGACAAAAGAACAAAATAGGCAACTCGAGCGTGATGCACTATTCAGGAAGAAGCACAACATTCATGTGTCTGGGTACAATATCCCGTCCCCGCTTCAAAATTTTAGTGAGTTGAGCTCAAGATACAAATGTGAACCATACTTATTACGCAATCTGGCAGAACTTGGATTCAGAGAACCAACACCTATCCAAAGGCAGGCTATTCCTGTACTCCTACATGATCGTGAATGCTTTGCCTGTGCCCCTACTGGCTCCGGAAAAACCTTGGCATTTGCATGCCCCATGCTTATAAAGCTTAAGGACCCATCAAAAAATGGCATCCGAGCTGTAGTCCTTTGTCATACTCGTGAATTATCTACACAAACATACAGAGAGTGCAAAAAGCTGGCTAAGGGAAAAAAATTCCGTATCAAGCTAATGACAAAAGAACTAGCAAGAAATGGTGATTTTTCAAAATTTTCATGTGATATACTTATATCCACACCACTTCGATTACACCTGGCTATCCGGAGGAAAAAGGTTGACCTTAGCAGAGTAGAGTATCTTGTCTTGGATGAATCAGATAAGCTTTTTGAGGCTGGATTGTTCAAGCAGATCGATTCTATTATCAAAGCATGCTCAAATCCTTCAATAATACGCTCACTTTTCAGTGCCACTTTACCTGATTTTGTTGAGGATCGTGCTCGGGAACTTATGCATGATGCTGTTAGAGTTATTGTCGGCAGAAAGAATATGGCTTCTGAAACAATAAAGCAAAAATTGGTTTTTACTGGGAGTGAAGAGGGAAAACTTATGGCAATTCGCCAAAGCTTTGCAGAGAGCTTAAATCCCCCAGTGTTGGTCTTTGTCCAAAGCAAGGAGCGAGCAAAGGAACTCTATGGTGAACTAGAATTTGACAACATTAAAGTTGACGTTATCCATTCTGATTTGTTTCAAAAGGAGCGAGAAGACGCCATTGATAATTTCAGAGCTGGCAAAACATGGGTTTTAATTGCTACTGATGTAGTTGCTCGAGGCATGGATTTCAAAGGCGTGAAGTGTGTGATTAACTATGATTTTCCAGATTCTGCTGCTGCATACATCCATAGGATTGGTCGTTCTGGCAGAGCAGGGAGGGCTGGAGAAGCTATGACATTTTATTCGGAGGATGACATCCCATTGCTGCGCAACATAGCTAACCTGATGGCAGCATCAGGTTGTGAAGTTCCATCTTGGCTTCTGGAGTTGCCCAAAAAGAAGTGGAAGAAACACCGGCCCCAAAGAGATTCTATCTCAACCAAACCTAAAGTATAA 1584 0.4249 MANDSSFLFSGIRFDRKRFGSDMTKFEKKKESDQSVNISSSVDIENAGPEEGKASAKKRKRKGAASEKADGFSVFRKSKSAEHRQKDEDKAVVESVPQTKEQNRQLERDALFRKKHNIHVSGYNIPSPLQNFSELSSRYKCEPYLLRNLAELGFREPTPIQRQAIPVLLHDRECFACAPTGSGKTLAFACPMLIKLKDPSKNGIRAVVLCHTRELSTQTYRECKKLAKGKKFRIKLMTKELARNGDFSKFSCDILISTPLRLHLAIRRKKVDLSRVEYLVLDESDKLFEAGLFKQIDSIIKACSNPSIIRSLFSATLPDFVEDRARELMHDAVRVIVGRKNMASETIKQKLVFTGSEEGKLMAIRQSFAESLNPPVLVFVQSKERAKELYGELEFDNIKVDVIHSDLFQKEREDAIDNFRAGKTWVLIATDVVARGMDFKGVKCVINYDFPDSAAAYIHRIGRSGRAGRAGEAMTFYSEDDIPLLRNIANLMAASGCEVPSWLLELPKKKWKKHRPQRDSISTKPKV 527
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere02g0979 527 Pfam DEAD/DEAH box helicase 158 322 IPR011545 GO:0003676|GO:0005524
Dere02g0979 527 MobiDBLite consensus disorder prediction 50 104 - -
Dere02g0979 527 Gene3D - 343 522 IPR027417 -
Dere02g0979 527 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 134 162 IPR014014 GO:0003724
Dere02g0979 527 SMART helicmild6 387 468 IPR001650 -
Dere02g0979 527 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 346 507 IPR001650 -
Dere02g0979 527 MobiDBLite consensus disorder prediction 25 104 - -
Dere02g0979 527 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 165 480 IPR027417 -
Dere02g0979 527 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 67 513 - -
Dere02g0979 527 CDD SF2_C_DEAD 347 477 - -
Dere02g0979 527 CDD DEADc_DDX52 145 338 IPR044764 GO:0003724|GO:0005524|GO:0030490
Dere02g0979 527 Pfam Helicase conserved C-terminal domain 370 468 IPR001650 -
Dere02g0979 527 Gene3D - 109 342 IPR027417 -
Dere02g0979 527 SMART ultradead3 153 350 IPR014001 -
Dere02g0979 527 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 165 335 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere02g0979 Dere-ChrDere02 9265562 9270783 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere02g0979 128 506 Eukaryotic Initiation Factors Gene Family AT3G19760 31.759 8.23e-57 193