Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Dere02g0979 | ATGGCTAATGACTCCTCGTTTTTGTTCTCCGGCATTCGCTTTGATAGAAAGAGGTTCGGCAGTGATATGACTAAGTTCGAGAAGAAAAAAGAAAGCGATCAGTCCGTGAATATTTCGAGCTCGGTTGATATTGAGAACGCAGGACCCGAAGAAGGAAAAGCATCTGCGAAGAAGAGGAAGCGGAAGGGAGCGGCTTCAGAAAAGGCAGATGGATTCAGTGTCTTTAGAAAATCAAAATCAGCCGAACATCGACAAAAAGATGAAGATAAAGCTGTGGTTGAGTCCGTCCCGCAGACAAAAGAACAAAATAGGCAACTCGAGCGTGATGCACTATTCAGGAAGAAGCACAACATTCATGTGTCTGGGTACAATATCCCGTCCCCGCTTCAAAATTTTAGTGAGTTGAGCTCAAGATACAAATGTGAACCATACTTATTACGCAATCTGGCAGAACTTGGATTCAGAGAACCAACACCTATCCAAAGGCAGGCTATTCCTGTACTCCTACATGATCGTGAATGCTTTGCCTGTGCCCCTACTGGCTCCGGAAAAACCTTGGCATTTGCATGCCCCATGCTTATAAAGCTTAAGGACCCATCAAAAAATGGCATCCGAGCTGTAGTCCTTTGTCATACTCGTGAATTATCTACACAAACATACAGAGAGTGCAAAAAGCTGGCTAAGGGAAAAAAATTCCGTATCAAGCTAATGACAAAAGAACTAGCAAGAAATGGTGATTTTTCAAAATTTTCATGTGATATACTTATATCCACACCACTTCGATTACACCTGGCTATCCGGAGGAAAAAGGTTGACCTTAGCAGAGTAGAGTATCTTGTCTTGGATGAATCAGATAAGCTTTTTGAGGCTGGATTGTTCAAGCAGATCGATTCTATTATCAAAGCATGCTCAAATCCTTCAATAATACGCTCACTTTTCAGTGCCACTTTACCTGATTTTGTTGAGGATCGTGCTCGGGAACTTATGCATGATGCTGTTAGAGTTATTGTCGGCAGAAAGAATATGGCTTCTGAAACAATAAAGCAAAAATTGGTTTTTACTGGGAGTGAAGAGGGAAAACTTATGGCAATTCGCCAAAGCTTTGCAGAGAGCTTAAATCCCCCAGTGTTGGTCTTTGTCCAAAGCAAGGAGCGAGCAAAGGAACTCTATGGTGAACTAGAATTTGACAACATTAAAGTTGACGTTATCCATTCTGATTTGTTTCAAAAGGAGCGAGAAGACGCCATTGATAATTTCAGAGCTGGCAAAACATGGGTTTTAATTGCTACTGATGTAGTTGCTCGAGGCATGGATTTCAAAGGCGTGAAGTGTGTGATTAACTATGATTTTCCAGATTCTGCTGCTGCATACATCCATAGGATTGGTCGTTCTGGCAGAGCAGGGAGGGCTGGAGAAGCTATGACATTTTATTCGGAGGATGACATCCCATTGCTGCGCAACATAGCTAACCTGATGGCAGCATCAGGTTGTGAAGTTCCATCTTGGCTTCTGGAGTTGCCCAAAAAGAAGTGGAAGAAACACCGGCCCCAAAGAGATTCTATCTCAACCAAACCTAAAGTATAA | 1584 | 0.4249 | MANDSSFLFSGIRFDRKRFGSDMTKFEKKKESDQSVNISSSVDIENAGPEEGKASAKKRKRKGAASEKADGFSVFRKSKSAEHRQKDEDKAVVESVPQTKEQNRQLERDALFRKKHNIHVSGYNIPSPLQNFSELSSRYKCEPYLLRNLAELGFREPTPIQRQAIPVLLHDRECFACAPTGSGKTLAFACPMLIKLKDPSKNGIRAVVLCHTRELSTQTYRECKKLAKGKKFRIKLMTKELARNGDFSKFSCDILISTPLRLHLAIRRKKVDLSRVEYLVLDESDKLFEAGLFKQIDSIIKACSNPSIIRSLFSATLPDFVEDRARELMHDAVRVIVGRKNMASETIKQKLVFTGSEEGKLMAIRQSFAESLNPPVLVFVQSKERAKELYGELEFDNIKVDVIHSDLFQKEREDAIDNFRAGKTWVLIATDVVARGMDFKGVKCVINYDFPDSAAAYIHRIGRSGRAGRAGEAMTFYSEDDIPLLRNIANLMAASGCEVPSWLLELPKKKWKKHRPQRDSISTKPKV | 527 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Dere02g0979 | 527 | Pfam | DEAD/DEAH box helicase | 158 | 322 | IPR011545 | GO:0003676|GO:0005524 | |
Dere02g0979 | 527 | MobiDBLite | consensus disorder prediction | 50 | 104 | - | - | |
Dere02g0979 | 527 | Gene3D | - | 343 | 522 | IPR027417 | - | |
Dere02g0979 | 527 | ProSiteProfiles | DEAD-box RNA helicase Q motif profile. | 134 | 162 | IPR014014 | GO:0003724 | |
Dere02g0979 | 527 | SMART | helicmild6 | 387 | 468 | IPR001650 | - | |
Dere02g0979 | 527 | ProSiteProfiles | Superfamilies 1 and 2 helicase C-terminal domain profile. | 346 | 507 | IPR001650 | - | |
Dere02g0979 | 527 | MobiDBLite | consensus disorder prediction | 25 | 104 | - | - | |
Dere02g0979 | 527 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 165 | 480 | IPR027417 | - | |
Dere02g0979 | 527 | PANTHER | ATP-DEPENDENT RNA HELICASE RHLE-RELATED | 67 | 513 | - | - | |
Dere02g0979 | 527 | CDD | SF2_C_DEAD | 347 | 477 | - | - | |
Dere02g0979 | 527 | CDD | DEADc_DDX52 | 145 | 338 | IPR044764 | GO:0003724|GO:0005524|GO:0030490 | |
Dere02g0979 | 527 | Pfam | Helicase conserved C-terminal domain | 370 | 468 | IPR001650 | - | |
Dere02g0979 | 527 | Gene3D | - | 109 | 342 | IPR027417 | - | |
Dere02g0979 | 527 | SMART | ultradead3 | 153 | 350 | IPR014001 | - | |
Dere02g0979 | 527 | ProSiteProfiles | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 165 | 335 | IPR014001 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Dere02g0979 | Dere-ChrDere02 | 9265562 | 9270783 | Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Dere02g0979 | 128 | 506 | Eukaryotic Initiation Factors Gene Family | AT3G19760 | 31.759 | 8.23e-57 | 193 |